[REVIEW]: fseval: A Benchmarking Framework for Feature Selection and Feature Ranking Algorithms

[editorialbot]

Submitting author: @dunnkers (Jeroen Gerard Sebastiaan Overschie)
Repository: https://github.com/dunnkers/fseval
Branch with paper.md (empty if default branch): paper
Version: 3.1.0
Editor: @diehlpk
Reviewers: @mcasl, @estefaniatalavera
Archive: 10.5281/zenodo.7343417

Status

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Markdown: [![status](https://joss.theoj.org/papers/d850aeb67247318aeef735d5eca95c1c/status.svg)](https://joss.theoj.org/papers/d850aeb67247318aeef735d5eca95c1c)

Reviewers and authors:

Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)

Reviewer instructions & questions

@mcasl & @estefaniatalavera, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review.
First of all you need to run this command in a separate comment to create the checklist:

@editorialbot generate my checklist

The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @diehlpk know.

✨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest ✨

Checklists

📝 Checklist for @mcasl

📝 Checklist for @estefaniatalavera

[editorialbot]

Hello humans, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf

[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.88  T=0.09 s (42.7 files/s, 4799.5 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
TeX                              1             16              0            204
Markdown                         1             28              0            178
YAML                             1              1              4             18
SVG                              1              0              0              1
-------------------------------------------------------------------------------
SUM:                             4             45              4            401
-------------------------------------------------------------------------------


gitinspector failed to run statistical information for the repository

[editorialbot]

Wordcount for paper.md is 1376

[editorialbot]

Failed to discover a valid open source license

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1016/j.eswa.2015.07.007 is OK
- 10.1109/ICCV.2015.478 is OK
- 10.1109/TPAMI.2005.159 is OK
- 10.1007/10968987_3 is OK
- 10.1145/2641190.2641198 is OK

MISSING DOIs

- None

INVALID DOIs

- None

[dunnkers]

@editorialbot check repository from branch master

[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.88  T=0.21 s (931.8 files/s, 38979.6 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          81           1024            658           3096
Markdown                        19            437              0           1227
YAML                            67             14             10            639
SVG                             10              6              1            495
JavaScript                       7             32             36            343
JSON                             7              0              0             98
CSS                              4             11             10             60
TypeScript                       1              5              2             34
Dockerfile                       1              1              0              2
-------------------------------------------------------------------------------
SUM:                           197           1530            717           5994
-------------------------------------------------------------------------------


gitinspector failed to run statistical information for the repository

[editorialbot]

Failed to discover a Statement of need section in paper

[dunnkers]

@editorialbot generate pdf

(should now discover Statement of need)

[dunnkers]

@editorialbot generate pdf

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[mcasl]

Review checklist for @mcasl

Conflict of interest

• ✅ I confirm that I have read the JOSS conflict of interest (COI) policy and that: I have no COIs with reviewing this work or that any perceived COIs have been waived by JOSS for the purpose of this review.

Code of Conduct

• ✅ I confirm that I read and will adhere to the JOSS code of conduct.

General checks

• ✅ Repository: Is the source code for this software available at the https://github.com/dunnkers/fseval?
• ✅ License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
• ✅ Contribution and authorship: Has the submitting author (@dunnkers) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?
• ✅ Substantial scholarly effort: Does this submission meet the scope eligibility described in the JOSS guidelines

Functionality

• ✅ Installation: Does installation proceed as outlined in the documentation?

• ✅ Functionality: Have the functional claims of the software been confirmed?

• ✅ Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

• ✅ A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?

• ✅ Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.

• ✅ Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?

• ✅ Automated tests: Are there automated tests or manual steps described so that the functionality of the software can be verified?

• ✅ Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).

• ✅ Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Software paper

• ✅ Summary: Has a clear description of the high-level functionality and purpose of the software for a diverse, non-specialist audience been provided?
• ✅ A statement of need: Does the paper have a section titled 'Statement of need' that clearly states what problems the software is designed to solve, who the target audience is, and its relation to other work?
• ✅ State of the field: Do the authors describe how this software compares to other commonly-used packages?
• ✅ Quality of writing: Is the paper well written (i.e., it does not require editing for structure, language, or writing quality)?
• ✅ References: Is the list of references complete, and is everything cited appropriately that should be cited (e.g., papers, datasets, software)? Do references in the text use the proper citation syntax?

[diehlpk]

@editorialbot generate pdf

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[mcasl]

The ‘Software Paper’ section of my checklist shows that “State of the field” and “References” need improvement. I failed to discover the state of the field in the paper, and thus, while completing that section, the references will need to be update to reflect the new additions to the paper

[mcasl]

The “Documentation” section of my checklist shows that a “Statement of need” is missing. The target audience is covered in the motivation section of the documentation, but the description of the problems the software is designed to solve is weak.

[mcasl]

The “Documentation” section of my checklist shows that the “Installation instructions” need improvement. Though there is a requeriments.txt file to automatically install the dependencies, the documentation fails to explicitly describe these dependencies.

[mcasl]

@editorialbot commands

[editorialbot]

Hello @mcasl, here are the things you can ask me to do:

# List all available commands
@editorialbot commands

# Get a list of all editors's GitHub handles
@editorialbot list editors

# Check the references of the paper for missing DOIs
@editorialbot check references

# Perform checks on the repository
@editorialbot check repository

# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist

# Set a value for branch
@editorialbot set joss-paper as branch

# Generates the pdf paper
@editorialbot generate pdf

# Get a link to the complete list of reviewers
@editorialbot list reviewers

[mcasl]

The checklist shows that “Functionality documentation” needs improvement. Though the methods’ documentation reflects the parameters, results and a succinct explanation of what they do, more time has to be devoted to the documentation to clearly explain the new user the elements of the library and how to use them.

[diehlpk]

Hi @dunnkers, please have a look at the comments above.

[editorialbot]

🚨🚨🚨 THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JOSS! 🚨🚨🚨

Here's what you must now do:

0. Check final PDF and Crossref metadata that was deposited 👉 Creating pull request for 10.21105.joss.04611 joss-papers#3749
1. Wait a couple of minutes, then verify that the paper DOI resolves https://doi.org/10.21105/joss.04611
2. If everything looks good, then close this review issue.
3. Party like you just published a paper! 🎉🌈🦄💃👻🤘

Any issues? Notify your editorial technical team...

[danielskatz]

This DOI isn't resolving for me yet - I will leave this issue open for now, and come back and check again in a little while. But other than that, the process is complete

[dunnkers]

This DOI isn't resolving for me yet - I will leave this issue open for now, and come back and check again in a little while. But other than that, the process is complete

👍. I also cannot get hold of the DOI link.

By the way: is it possible to have my name displayed as Jeroen G. S. Overschie instead of Jeroen G. s. Overschie (capitalised second names) on the JOSS website?

That would be awesome. Thanks

[danielskatz]

@arfon - can you check on the DOI issue, as well as the author's name as discussed above?

[arfon]

@xuanxu @tarleb – the name formatting looks good in the PDF here: https://github.com/openjournals/joss-papers/blob/f0d0a5e8b17e200bc09a0ecac00c59149ccba189/joss.04611/10.21105.joss.04611.pdf – is there a preferred way we can override the name in the front matter to accomplish this?

[arfon]

@editorialbot re-accept

[editorialbot]

I'm sorry human, I don't understand that. You can see what commands I support by typing:

@editorialbot commands

[arfon]

@editorialbot reaccept

[editorialbot]

Rebuilding paper!

[editorialbot]

🌈 Paper updated!

New PDF and metadata files 👉 openjournals/joss-papers#3752

[arfon]

DOI is now resolving but we'll need to re-reaccept when we figure out the capitalisation issue.

[danielskatz]

While we wait for the final name fix, thanks to @mcasl and @estefaniatalavera for reviewing, and to @diehlpk for editing!! We couldn't do this without you

[tarleb]

It seems to be limited to the HTML presentation; both the PDF and JATS have the correct capitalization. Not sure what might be causing this.

[arfon]

@xuanxu - perhaps this is theoj Gem doing something weird here?

[xuanxu]

Yes, the parsing was taking the second names as a dropping particle.
Reaccepting the paper after this change should fix it.

[dunnkers]

Yes, the parsing was taking the second names as a dropping particle. Reaccepting the paper after this change should fix it.

That's awesome @xuanxu . PR approved & merged ✓

[danielskatz]

@editorialbot reaccept

[editorialbot]

Rebuilding paper!

[editorialbot]

🌈 Paper updated!

New PDF and metadata files 👉 openjournals/joss-papers#3757

[danielskatz]

All now looks good to me - thanks @arfon and @xuanxu !!

[danielskatz]

And congratulations to @dunnkers and co-authors!!

[editorialbot]

🎉🎉🎉 Congratulations on your paper acceptance! 🎉🎉🎉

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