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Adding images for the LEMS_MyNetwork nml run
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mwatts15 committed Apr 15, 2021
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Expand Up @@ -98,6 +98,16 @@ This will create a NeuroML 2 file and a LEMS file to execute it, containing 2 ce

pynml LEMS_MyNetwork.xml

This produces two plots: One is neuron activity, measured as calcium ion concentration. You will likely need to click "Frame" in the "View" menu to scale the plot.

![activity](images/LEMS_MyNetwork-activity.png)


The other shows membrane potential for each neuron in the network.

![membrane potential](images/LEMS_MyNetwork-membranePotential.png)


To see the structure of the network, use pyNeuroML:

pynml MyNetwork.net.nml -graph 4c # Try other options like 1, 2f, 5c for varying levels of detail
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