Repositories list

• rbcf

  Public
  R Bindings for htslib/bcf

  C

  •

  MIT License

  •3•0•0•1•Updated Oct 11, 2023Oct 11, 2023

• evoGO

  Public
  Gene Ontology (GO) enrichment analysis

  R

  •

  GNU General Public License v2.0

  •1•7•0•0•Updated Aug 7, 2023Aug 7, 2023

• ml-from-omics

  Public
  Code required to reproduce results from the book chapter "Machine learning from omics data" (Springer Protocols, 2021)

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•14•0•0•Updated Apr 19, 2023Apr 19, 2023

• vcf-info2format

  Public
  A small utility that transfers INFO tags into the FORMAT in a single-sample VCF

  Rust

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 25, 2023Feb 25, 2023

• BAMscale

  Public
  BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

  C

  •

  Other

  •17•0•0•0•Updated Jan 7, 2021Jan 7, 2021

• rBigWig

  Public
  R Wrapper for libbigwig

  R

  •

  MIT License

  •0•0•0•0•Updated Nov 9, 2020Nov 9, 2020

• libBigWig

  Public
  A C library for handling bigWig files

  C

  •

  MIT License

  •25•0•0•0•Updated Nov 9, 2020Nov 9, 2020

• mutsig

  Public
  Lightweight tool to calculation mutation signatures from (multi-sample) VCF files

  Rust

  •0•0•0•0•Updated Nov 5, 2020Nov 5, 2020