Repositories list

• mito-synapto-spine-analysis

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• CALM

  Public
  Crick Advanced Light Microscopy

  Jupyter Notebook

  •

  Creative Commons Attribution Share Alike 4.0 International

  •1•1•4•0•Updated Jan 27, 2025Jan 27, 2025

• network_invsync

  Public
  Verify ISE and YAML inventory are synchronized

  Python

  •

  GNU General Public License v3.0

  •0•0•0•11•Updated Jan 14, 2025Jan 14, 2025

• PooledPEScreen

  Public
  Accompanying code to "High-throughput screening of human genetic variants by pooled prime editing"

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• Segment-Flow

  Public
  Nextflow pipeline for deep learning segmentation models

  Python

  •1•2•0•0•Updated Jan 7, 2025Jan 7, 2025

• TRACERx-PHLEX

  Public
  Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

  Shell

  •

  MIT License

  •0•12•2•0•Updated Jan 6, 2025Jan 6, 2025

• hts_neutralisation_launcher

  Public
  Automate neutralisation analyses

  Python

  •1•0•2•0•Updated Dec 18, 2024Dec 18, 2024

• plaque_assay

  Public
  Analysis code for covid-19 serology neutralisation assay.

  Python

  •

  MIT License

  •1•0•6•0•Updated Dec 18, 2024Dec 18, 2024

• sparks

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•6•0•0•Updated Dec 12, 2024Dec 12, 2024

• nextflow-modules

  Public
  Contains managed modules and subworkflows for Nextflow that can be installed into pipelines

  Nextflow

  •

  MIT License

  •0•1•0•0•Updated Nov 28, 2024Nov 28, 2024

• CBIAS_napari_workshop_2024

  Public
  CBIAS napari workshop 2024 - run as part of the Crick Bioimage Analysis Symposium 2024

  Jupyter Notebook

  •1•2•0•0•Updated Nov 27, 2024Nov 27, 2024

• cbias2024_napari_demo

  Public
  Demo plugin for CBIAS 2024 Napari workshop

  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• OmeSliCC

  Public
  Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

  ome-zarr-converter

  Python

  •

  Other

  •1•7•0•0•Updated Nov 18, 2024Nov 18, 2024

• chronogram

  Public
  cast and annotate metadata, laboratory & clinical data

  R

  •

  Other

  •0•1•0•0•Updated Nov 8, 2024Nov 8, 2024

• MT_Force_Spindle

  Public
  Public codes for Chu et al.,

  Jupyter Notebook

  •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

• introduction-to-image-analysis

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution Share Alike 4.0 International

  •3•2•0•0•Updated Oct 21, 2024Oct 21, 2024

• AIoD-Model-Registry

  Public
  The core registry for all AI models available on AI on Demand

  Python

  •0•0•2•0•Updated Oct 15, 2024Oct 15, 2024

• babs-data-challenge-rna-atac

  Public
  Recruitment ATAC & RNA-seq data challenge questions and material

  2•0•0•0•Updated Oct 10, 2024Oct 10, 2024

• Making-Lab-Repositories

  Public
  0•2•0•0•Updated Oct 9, 2024Oct 9, 2024

• Monitor-Blanking-V2

  Public
  Monitor blanking for msi displays

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

• TWOMBLI

  Public
  A ImageJ Plugin implementation of TWOMBLI

  Java

  •4•0•3•0•Updated Oct 9, 2024Oct 9, 2024

• cellpose

  Public
  a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •420•0•0•0•Updated Oct 7, 2024Oct 7, 2024

• multi-dimensional-imaging-and-analysis

  Public
  Jupyter Notebook

  •1•4•0•0•Updated Sep 24, 2024Sep 24, 2024

• sparks-ai

  Public template
  HTML

  •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

• uniprot_annotation

  Public
  A script to collect residue annotations for a list of proteins using the UniProt ID mapping tool

  Python

  •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• TYPEx

  Public
  Deep cell phenoTYPE characterisation using multipleX imaging

  R

  •

  MIT License

  •0•0•1•0•Updated Sep 12, 2024Sep 12, 2024

• 3D-printer-simulator

  Public
  3D printer simulator

  Python

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated Aug 30, 2024Aug 30, 2024

• image-analysis-outreach

  Public
  A collection of materials and information for school outreach sessions about image analysis

  GNU General Public License v3.0

  •0•2•0•0•Updated Aug 20, 2024Aug 20, 2024

• python-decon

  Public
  Python

  •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

• rgb-colour-slider

  Public
  Colour slider activity to teach how RGB colours combine

  HTML

  •1•0•0•0•Updated Aug 5, 2024Aug 5, 2024