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    34 repositories

    • decoupledLaplace

      Public
      Some simple code to test out decoupled Laplace approximation for evidence optimization
      MATLAB
      •0•0•0•0•Updated Jul 14, 2024Jul 14, 2024

    • multilinearRegression

      Public
      MATLAB
      •
      MIT License
      •1•2•0•0•Updated Jun 6, 2024Jun 6, 2024

    • VLR-STRF

      Public
      variational low rank estimation for spatiotemporal receptive fields
      MATLAB
      •2•3•0•0•Updated May 22, 2023May 22, 2023

    • StepRampMCMC

      Public
      Cuda
      •
      MIT License
      •4•6•1•0•Updated Feb 8, 2023Feb 8, 2023

    • GaussHermiteQuadrature

      Public
      Gauss-Hermite Quadrature (for approximating integrals w.r.t. a Gaussian density)
      MATLAB
      •
      MIT License
      •0•3•0•0•Updated Feb 3, 2023Feb 3, 2023

    • invBlockTriDiag

      Public
      Efficiently compute central and off-diagonal blocks of the inverse of a block-tridiagonal matrix
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Dec 25, 2022Dec 25, 2022

    • automaticRidgeRegression

      Public
      Maximum-evidence linear regression with ridge and graph Laplacian (smoothing) priors
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Nov 8, 2022Nov 8, 2022

    • activelearningTCs

      Public
      MATLAB
      •
      MIT License
      •1•5•0•0•Updated Sep 19, 2022Sep 19, 2022

    • GLMspiketraintutorial_python

      Public
      Jupyter Notebook
      •12•49•0•0•Updated Sep 5, 2022Sep 5, 2022

    • GLMspiketraintutorial

      Public
      Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data
      MATLAB
      •
      MIT License
      •36•92•1•0•Updated Jul 18, 2022Jul 18, 2022

    • simple-IO-HMM

      Public
      Implementation of an input-output HMM with linear-Gaussian outputs
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated May 23, 2022May 23, 2022

    • CBEM

      Public
      conductance-based encoding model
      MATLAB
      •
      MIT License
      •2•3•0•0•Updated May 23, 2022May 23, 2022

    • neu314data

      Public
      Datasets for "Mathematical Tools for Neuroscience" (NEU 314)
      MIT License
      •0•1•0•0•Updated Nov 30, 2021Nov 30, 2021

    • gaudy-images

      Public
      Code for "High-contrast 'gaudy' images improve the training of deep neural network models of visual cortex" by Cowley and Pillow, NeurIPS 2020.
      Python
      •1•6•0•0•Updated May 19, 2021May 19, 2021

    • raisedCosineBasis

      Public
      makes raised cosine basis with log scaling of x axis
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Jan 22, 2021Jan 22, 2021

    • neu560data

      Public
      Datasets for NEU 560
      1•0•0•0•Updated Nov 13, 2020Nov 13, 2020

    • psytrack_learning

      Public
      Extension of Psytrack to include learning
      Jupyter Notebook
      •
      MIT License
      •0•10•0•0•Updated Nov 8, 2020Nov 8, 2020

    • mTDRdemo

      Public
      Self-contained code to demonstrate how to use mTDR.
      MATLAB
      •0•4•0•0•Updated Oct 8, 2020Oct 8, 2020

    • neuroGLM

      Public
      Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
      MATLAB
      •
      MIT License
      •38•68•6•1•Updated May 12, 2020May 12, 2020

    • PYMentropy

      Public
      Discrete entropy estimator using the Pitman-Yor mixture (PYM) prior
      MATLAB
      •
      BSD 2-Clause "Simplified" License
      •4•18•1•0•Updated Apr 5, 2020Apr 5, 2020

    • PoissonBalancedNets

      Public
      Implementation of Balanced Spiking Networks with Poisson Neurons, from Rullan & Pillow 2019.
      MATLAB
      •3•6•0•0•Updated Mar 4, 2020Mar 4, 2020

    • fastASD

      Public
      Fast inference for high-D receptive fields using Automatic Smoothness Determination (ASD)
      MATLAB
      •
      MIT License
      •2•9•0•0•Updated Oct 27, 2019Oct 27, 2019

    • adaptiveOptimalTraining

      Public
      adaptive optimal training of animal behavior
      MATLAB
      •
      MIT License
      •1•3•0•0•Updated Sep 4, 2019Sep 4, 2019

    • GLMspiketools

      Public
      Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
      MATLAB
      •
      MIT License
      •26•37•0•0•Updated Jul 23, 2019Jul 23, 2019

    • adaptivePsychophysicsToolbox

      Public
      For effective analysis and optimal experiment design for psychophysics experiments
      MATLAB
      •
      MIT License
      •0•9•0•0•Updated Dec 6, 2018Dec 6, 2018

    • subunit_mele

      Public
      Moment based estimator for subunit model described in Wu et.al, 2015
      MATLAB
      •0•0•0•0•Updated Jul 17, 2018Jul 17, 2018

    • DRD

      Public
      DRD model described in Wu et.al, 2014
      MATLAB
      •0•1•0•0•Updated Jul 13, 2018Jul 13, 2018

    • LNPfitting

      Public
      Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood
      MATLAB
      •
      MIT License
      •2•19•0•0•Updated Nov 26, 2017Nov 26, 2017

    • ratmapGPs

      Public
      GP regression for place field estimation
      MATLAB
      •0•0•0•0•Updated Nov 4, 2017Nov 4, 2017

    • iSTAC

      Public
      information-theoretic Spike-Triggered Average and Covariance (iSTAC) estimator for receptive fields
      MATLAB
      •
      MIT License
      •1•5•0•0•Updated Sep 19, 2017Sep 19, 2017