Repositories list

• RShiny_PlantPhenology

  Public
  PlantPhenology is an interactive shiny app that allows any user to visualize the phenological shifts in plant species in response to climate change.

  R

  •0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• Rshiny_ButterflyMuseumSpecimens

  Public
  ButterflyMuseumSpecimens is an interactive shiny app that allows any user to visualize the relationship between temperature and butterflies' morphology and physiology taken from museum specimens.

  shiny

  R

  •1•1•0•0•Updated Jul 2, 2024Jul 2, 2024

• RShiny_ButterflyHeatBudget

  Public
  This interactive shiny app allows user to explore how organisms exchange heat with their environments. We focus on an energy balance that predicts the body temperatures of a montane butterfly.

  visualizesheat-budget-modelshiny

  R

  •0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• RShiny_Robomussels

  Public
  Rshiny_robomussels is an interactive shiny app that allows any user to visualize the operative temperatures of mussels on a microclimatic scale.

  R

  •0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• RShiny_RangeShifts

  Public
  RangeShifts is an interactive shiny app that allows any user to visualize the effects of climate change on marine species range shifts.

  R

  •0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• RShiny_RMBL-phenology

  Public
  RShiny_RMBL-phenology is an interactive shiny app that allows any user to visualize the relationships between climatic variables and phenology of hibernating species, migratory species, and some plant species.

  R

  •0•1•0•0•Updated Jul 2, 2024Jul 2, 2024

• Climate-Change-Metabolism

  Public
  A Shiny visualization of Climate Change and its effect on the energy use of ectotherms.

  weather-dataclimate-changevisualization

  R

  •0•1•3•0•Updated Jul 2, 2024Jul 2, 2024

• TrenchR

  Public
  an R package for transparent environmental and ecological biophysics

  R

  •

  Other

  •7•12•2•0•Updated Sep 29, 2023Sep 29, 2023

• ESA_MechModelWorkshop

  Public
  Rmd files for ESA workshop on mechanistic niche modeling

  HTML

  •1•0•0•0•Updated Aug 6, 2023Aug 6, 2023

• TrenchRmanuscript

  Public
  Software note introducing TrenchR package

  HTML

  •2•0•1•0•Updated Aug 1, 2023Aug 1, 2023

• Insect__Climate_Change_Responses

  Public
  This repository contains data and scripts for the manuscript "Temperature sensitivity of fitness components across life cycles drives insect responses to climate change" and some extensions beyond the manuscript. This project was done by Chris Johnson in 2020-2023.

  R

  •1•0•0•0•Updated Jun 20, 2023Jun 20, 2023

• R-Docker-Server

  Public template
  Assorted shell scripts and dockerfiles for a containerized RShiny/RStudio deployment strategy.

  dockerrstudiorshiny+ 1ec2-instance

  Shell

  •0•1•0•0•Updated Apr 3, 2023Apr 3, 2023

• RShiny_Microclim

  Public
  An interactive shiny app that facilitates the selection of microclimate data by offering spatial and temporal data comparisons.

  HTML

  •0•0•1•0•Updated Mar 2, 2023Mar 2, 2023

• trenchproject.github.io

  Public
  A notebook tracking the work of the TrEnCh Project.

  SCSS

  •

  MIT License

  •0•0•0•4•Updated Oct 19, 2022Oct 19, 2022

• Trench-IR

  Public
  Thermal image conversion, storage, and education resources to further understanding of how organisms experience their environment

  educationthermal-imaginginfrared+ 3irthermal-ecologytrenchproject

  CSS

  •0•1•4•0•Updated Mar 14, 2022Mar 14, 2022

• MicroclimMarkdown

  Public
  A users' guide to microclimate data for environmental and ecological biophysics. R Markdown text for a bookdown site with resources for accessing microclimate datasets. Within chapters corresponding the each dataset, we describe the requires set up and process for accessing data.

  TeX

  •

  Creative Commons Zero v1.0 Universal

  •0•0•1•0•Updated Jul 13, 2021Jul 13, 2021

• RShiny_PlasticityTradeoff

  Public
  PlasticityTradeoff is an interactive shiny app that allows any user to visualize the relationship between plasticity and thermal tolerance range of organisms across many taxa.

  R

  •0•0•0•0•Updated Jul 6, 2021Jul 6, 2021

• RShiny_ColiasModel

  Public
  RShiny_ColiasModel is an interactive shiny app that explores how wing absorptivity influences the body temperatures of butterflies and the consequences for butterfly populations

  R

  •0•0•0•0•Updated Jul 2, 2021Jul 2, 2021

• trenchproject

  Public
  Org readme

  0•0•0•0•Updated Apr 16, 2021Apr 16, 2021

• RShiny_BiophysicalModelMap

  Public
  BiophysicalModelMap is an interactive shiny app that allows users to visualize the current and future operative temperatures of organisms across the United States.

  R

  •0•0•0•0•Updated Feb 26, 2021Feb 26, 2021

• TSMviz

  Public archive
  The old version of RShiny_Lizards

  R

  •0•0•1•0•Updated Feb 26, 2021Feb 26, 2021

• RShiny_Lizards

  Public
  Rshiny_Lizards is an interactive shiny app that allows any user to visualize the distributions and the thermal safety margins of 15 species of lizards.

  R

  •1•0•0•0•Updated Jan 12, 2021Jan 12, 2021

• trenchir-functions

  Public
  JavaScript

  •0•1•0•0•Updated Dec 10, 2020Dec 10, 2020

• TrenchRmodules

  Public
  Physical processes in ecosystems: Educational modules introducing biophysical ecology and use of the TrEnChR package.

  energybiophysicseducational-resources+ 2ecology-modellingbookdown

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •0•0•2•0•Updated Nov 23, 2020Nov 23, 2020

• ClimateBiology

  Public archive
  The old version of RShiny_Robomussels

  HTML

  •3•0•0•0•Updated Mar 23, 2018Mar 23, 2018

• RED

  Public
  Framework to collect realtime environmental data(RED)

  satellite-imagerygoes

  Jupyter Notebook

  •0•0•0•0•Updated Oct 24, 2017Oct 24, 2017