volume-em

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10 repositories

empanada-napari-docs
Public
Documentation for empanada-napari (https://github.com/volume-em/empanada-napari)
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Aug 12, 2024Aug 12, 2024
empanada-napari
Public
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
electron-microscopy 3d 2d instance-segmentation mitochondria panoptic-segmentation napari-plugin deep-learning
Python
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BSD 3-Clause "New" or "Revised" License
•8•20•9•2•Updated Aug 6, 2024Aug 6, 2024
BSS-Tracker
Public
This is a project tracking tool that connects biological specimen entries with a project's investigator, biological sample and sample prep notes.
JavaScript
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Other
•0•0•0•0•Updated Mar 18, 2024Mar 18, 2024
empanada
Public
Panoptic segmentation algorithms for 2D and 3D electron microscopy images
electron-microscopy instance-segmentation panoptic-segmentation deep-learning pytorch segmentation semantic-segmentation
Python
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GNU General Public License v2.0
•0•2•4•2•Updated Feb 25, 2023Feb 25, 2023
cem-dataset
Public
Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
benchmarking pretrained-models electron-microscopy unsupervised-learning weights semantic-segmentation deep-learning pytorch
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•1•27•0•1•Updated Dec 30, 2022Dec 30, 2022
zooniverse-tools
Public
Scripts and notebooks for data wrangling from Zooniverse.
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Dec 13, 2022Dec 13, 2022
volume-em.github.io
Public
Projects developed for the volume EM community
0•2•0•0•Updated Oct 7, 2022Oct 7, 2022
scikit-image
Public
Image processing in Python
Python
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Other
•2.2k•0•0•0•Updated Jun 3, 2022Jun 3, 2022
cell-membrane-virus-interaction
Public
Tools for measuring characteristics of virus-cell interactions from isotropic volume EM data.
Python
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BSD 3-Clause "New" or "Revised" License
•0•1•0•0•Updated Oct 21, 2021Oct 21, 2021
bootstrap2.5d
Public
Code for the paper: Enforcing Prediction Consistency Across Orthogonal Planes Significantly Improves Segmentation of FIB-SEM Image Volumes by 2D Neural Networks.
Python
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BSD 3-Clause "New" or "Revised" License
•0•1•0•0•Updated Nov 24, 2020Nov 24, 2020