bump amrfinderplus dep version to '>=3.10.16'

oschwengers · Oct 18, 2021 · 71e2dac · 71e2dac
1 parent 9ddf09b
commit 71e2dac
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diff --git a/bakta/utils.py b/bakta/utils.py
@@ -40,7 +40,7 @@ def print_version(self):
 DEPENDENCY_HMMSEARCH = (Version(3, 3, 1), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('hmmsearch', '-h'), ['--skip-cds', '--skip-sorf'])
 DEPENDENCY_DIAMOND = (Version(2, 0, 10), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('diamond', 'help'), ['--skip-cds', '--skip-sorf'])
 DEPENDENCY_BLASTN = (Version(2, 7, 1), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('blastn', '-version'), ['--skip-ori'])
-DEPENDENCY_AMRFINDERPLUS = (Version(3, 10), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('amrfinder', '--version'), ['--skip-cds'])
+DEPENDENCY_AMRFINDERPLUS = (Version(3, 10, 16), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, ('amrfinder', '--version'), ['--skip-cds'])
 
 
 INSDC_ID_REGEX = re.compile(r'[^A-Za-z\d_.:*#-]')  # https://www.ncbi.nlm.nih.gov/WebSub/html/help/fasta.html

diff --git a/environment.yml b/environment.yml
@@ -16,4 +16,4 @@ dependencies:
   - hmmer>=3.3.1
   - diamond>=2.0.11
   - blast>=2.7.1
-  - ncbi-amrfinderplus>=3.10.14
+  - ncbi-amrfinderplus>=3.10.16