bump amrfinderplus dependency to v4.0.3

oschwengers · Oct 30, 2024 · 79223bb · 79223bb
1 parent 027dace
commit 79223bb
Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/bakta/utils.py b/bakta/utils.py
@@ -47,7 +47,7 @@ def print_version(self):
 DEPENDENCY_DIAMOND = (Version(2, 1, 10), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Diamond', ('diamond', 'help'), ['--skip-cds', '--skip-sorf'])
 DEPENDENCY_DEEPSIG = (Version(1, 2, 5), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'DeepSig', ('deepsig', '--version'), ['--gram ?'])
 DEPENDENCY_BLASTN = (Version(2, 14, 0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Blastn', ('blastn', '-version'), ['--skip-ori'])
-DEPENDENCY_AMRFINDERPLUS = (Version(3, 11, 26), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'AMRFinderPlus', ('amrfinder', '--version'), ['--skip-cds'])
+DEPENDENCY_AMRFINDERPLUS = (Version(4, 0, 3), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'AMRFinderPlus', ('amrfinder', '--version'), ['--skip-cds'])
 DEPENDENCY_CIRCOS = (Version(0, 69, 8), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Circos', ('circos', '--version'), ['--skip-plot'])
 
 

diff --git a/environment.yml b/environment.yml
@@ -17,5 +17,5 @@ dependencies:
   - pyhmmer>=0.10.15
   - diamond>=2.1.10
   - blast>=2.14.0
-  - ncbi-amrfinderplus>=3.11.26
+  - ncbi-amrfinderplus>=4.0.3
   - circos>=0.69.8