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fix CWL edam input types
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oschwengers committed Jan 21, 2022
1 parent 9f0f8cf commit a1a0ad1
Showing 1 changed file with 12 additions and 12 deletions.
24 changes: 12 additions & 12 deletions bakta.cwl
Original file line number Diff line number Diff line change
Expand Up @@ -143,57 +143,57 @@ outputs:
- doc: Hypothetical CDS AA sequences as Fasta
id: hypo_sequences_cds
type: File
format: edam:format_1929
format: edam:format_2200
outputBinding: {glob: '*.hypotheticals.faa'}
- doc: Information on hypothetical CDS as TSV
id: hypo_annotation_tsv
type: File
format: edam:format_1929
format: edam:format_3475
outputBinding: {glob: '*.hypotheticals.tsv'}
- doc: Annotation as TSV
id: annotation_tsv
type: File
format: edam:format_1929
format: edam:format_3475
outputBinding: {glob: '*.tsv'}
- doc: Annotation statistics as txt
id: annotation_txt
- doc: Annotation summary as txt
id: summary_txt
type: File
format: edam:format_2330
outputBinding: {glob: '*.txt'}
- doc: Annotation as JSON
id: annotation_json
type: File
format: edam:format_1929
format: edam:format_3464
outputBinding: {glob: '*.json'}
- doc: Annotation as GFF3
id: annotation_gff3
type: File
format: edam:format_1929
format: edam:format_1939
outputBinding: {glob: '*.gff3'}
- doc: Annotation as GenBank
id: annotation_gbff
type: File
format: edam:format_1929
format: edam:format_1936
outputBinding: {glob: '*.gbff'}
- doc: Annotation as EMBL
id: annotation_embl
type: File
format: edam:format_1929
format: edam:format_1927
outputBinding: {glob: '*.embl'}
- doc: Genome Sequences as Fasta
id: sequences_fna
type: File
format: edam:format_1929
format: edam:format_2200
outputBinding: {glob: '*.fna'}
- doc: Gene DNA sequences as Fasta
id: sequences_fna
type: File
format: edam:format_1929
format: edam:format_2200
outputBinding: {glob: '*.ffn'}
- doc: CDS AA sequences as Fasta
id: sequences_cds
type: File
format: edam:format_1929
format: edam:format_2200
outputBinding: {glob: '*.faa'}

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