gget tutorials

This repository contains immediatly executable Google Colab tutorials for gget. Also see the manual.

Available tutorials:

General tutorials:

🔗 General command-line tutorial covering basic gget commands

🔗 General JupyterLab tutorial covering basic gget commands

gget enrichr tutorials:

🔗 Perform a gene enrichment analysis with gget enrichr using a list of background genes

gget elm tutorials:

🔗 gget elm introduction

🔗 gget elm predicts the loss of a protein interaction motif involved in DNA repair in a carcinogenic BRCA2 mutation

🔗 Filter results returned by gget elm to identify disordered protein regions

gget alphafold tutorials:

🔗 Learn how to use gget alphafold in Google Colab

🔗 Check if a protein has crystal structure available on PDB. If not, create a de novo prediction and compare it to available crystal structures of related proteins.

gget_alphafold_demo.mov

scRNAseq tutorials:

🔗 Learn how gget can streamline comparative scRNA-seq analysis 1/2

🔗 Learn how gget can streamline comparative scRNA-seq analysis 2/2