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Dev#52

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Hu-JIN merged 22 commits intomainparklab/MuSiCal:mainfrom devparklab/MuSiCal:devCopy head branch name to clipboardApr 4, 2022

+301-75

Commits

Commits on Apr 2, 2022

• keep the exposures of individual sigs at the matching for single matching function

  dgulhan-bio

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  c798555

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• Revert "keep the exposures of individual sigs at the matching for single matching function"

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  dgulhan-bio

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  9dcc8d9

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• Retain information on the mapping between de novo sigs and matched sigs

  Hu-JIN

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  e5c5d46

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• Avoid using new signatures if possible during grid search

  Hu-JIN

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  e32749b

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• filter addressing flat background issues in matching

  dgulhan-bio

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  aeea2b6

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• Change method for selecting the best grid point during grid search.

  Hu-JIN

  committed
  99b24c9

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• Small update in terms of the best grid point

  Hu-JIN

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  14927a4

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• Update denovo.py

  Hu-JIN

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  b1ee802

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Commits on Apr 3, 2022

• Change constant name sigs_associated to SIGS_ASSOCIATED

  Hu-JIN

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  b1abe2f

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• Update get_sig_indices_associated()

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  Hu-JIN

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  05cc146

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• Make sure signature output of get_sig_indices_associated is np.array

  Hu-JIN

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  869b6dc

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• Update nnls_sparse.py

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  Hu-JIN

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  61bd523

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• Update get_sig_indices_associated

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  Hu-JIN

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  cd642a6

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• Update comment

  Hu-JIN

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  7165a81

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• Add SIGS_ASSOCIATED_DICT

  Hu-JIN

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  22dc177

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• Modify match in terms of connected_sigs

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  Hu-JIN

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  7385b5d

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• Handle connected_sigs in refitting

  Hu-JIN

  committed
  e73b741

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• Fix a bug in handling connected_sigs in refitting

  Hu-JIN

  committed
  8713258

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• Fix another bug in handling connected_sigs in refitting

  Hu-JIN

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  a654a57

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Commits on Apr 4, 2022

• Update method for selecting the best grid point

  Hu-JIN

  committed
  fa6d1d3

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• Update denovo.py

  Hu-JIN

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  70227c2

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• Add some comments

  Hu-JIN

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