-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
2 changed files
with
7 additions
and
23 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,8 @@ | ||
# Procrustean SVD (proSVD) | ||
Tools for streaming dimension reduction analyses of neural data. | ||
|
||
![alt text](lock-in.gif) | ||
|
||
See `notebooks/` for usage. | ||
|
||
#### To build: | ||
|
@@ -10,27 +12,9 @@ $ cd streamingSVD | |
$ pip install . | ||
``` | ||
|
||
#### TODO: | ||
- check correctness of init with with some other basis | ||
- use this to determine the alignment of some "hypothesis" subspace with the data? | ||
- artefact rejection with online ICA (ORICA)? | ||
- add input functions to pro.run() to run before (e.g. preprocessing) and after (e.g. project onto new subspace) each update | ||
- do we care about W??? | ||
- rename repo to proSVD | ||
|
||
#### datasets | ||
- iEEG seizures | ||
- EEG artefacts (TMS or eyeblink) | ||
- monkey reaching (O'shea data, jPCA data) | ||
- Neuropixels (Stringer, Musall) | ||
- widefield/behavior? (both pretty large data) | ||
#### To import: | ||
``` | ||
from proSVD.proSVD import proSVD | ||
``` | ||
|
||
#### methods | ||
- online: | ||
- Baker's seq-kl | ||
- slow feature analysis | ||
- ica | ||
- jpca | ||
- offline: | ||
- SVD | ||
- PSID? | ||
Under active development! Please contact [email protected] for any inquiries. |
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.