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Package: ratesci | ||
Type: Package | ||
Package: ratesci | ||
Title: Confidence Intervals for Comparisons of Binomial or Poisson Rates | ||
Version: 0.5.0.9000 | ||
Date: 2025-01-10 | ||
Authors@R: person("Pete", "Laud", email = "[email protected]", | ||
role = c("aut", "cre"), | ||
comment = c(ORCID = "0000-0002-3766-7090")) | ||
Authors@R: | ||
person("Pete", "Laud", , "[email protected]", role = c("aut", "cre"), | ||
comment = c(ORCID = "0000-0002-3766-7090")) | ||
Description: Computes confidence intervals for the rate (or risk) | ||
difference ('RD') or rate ratio (or relative risk, 'RR') for | ||
binomial proportions or Poisson rates, or for odds ratio | ||
('OR', binomial only). Also confidence intervals for a single | ||
binomial or Poisson rate, and intervals for matched pairs. | ||
Includes skewness-corrected asymptotic score ('SCAS') methods, | ||
which have been developed in Laud (2017) <doi:10.1002/pst.1813> | ||
from Miettinen & Nurminen (1985) <doi:10.1002/sim.4780040211> and | ||
Gart & Nam (1988) <doi:10.2307/2531848>. The same score produces | ||
hypothesis tests analogous to the test for binomial RD and RR by | ||
Farrington & Manning (1990) <doi:10.1002/sim.4780091208>, or the | ||
McNemar test for paired data. | ||
The package also includes MOVER methods | ||
(Method Of Variance Estimates Recovery) for all contrasts, derived | ||
from the Newcombe method but with options to use equal-tailed | ||
intervals in place of the Wilson score method, | ||
and generalised for Bayesian applications incorporating prior | ||
information. So-called 'exact' methods for strictly conservative | ||
coverage are approximated using continuity corrections, and the amount | ||
of correction can be selected to avoid over-conservative coverage. | ||
Also includes methods for stratified calculations (e.g. meta-analysis), | ||
either assuming fixed effects (matching the CMH test) or incorporating | ||
stratum heterogeneity. | ||
Depends: R (>= 3.6.0) | ||
License: GPL-3 | ||
Encoding: UTF-8 | ||
RoxygenNote: 7.3.2 | ||
Imports: polynom | ||
Suggests: testthat | ||
LazyData: true | ||
difference ('RD') or rate ratio (or relative risk, 'RR') for binomial | ||
proportions or Poisson rates, or for odds ratio ('OR', binomial only). | ||
Also confidence intervals for a single binomial or Poisson rate, and | ||
intervals for matched pairs. Includes skewness-corrected asymptotic | ||
score ('SCAS') methods, which have been developed in Laud (2017) | ||
<doi:10.1002/pst.1813> from Miettinen & Nurminen (1985) | ||
<doi:10.1002/sim.4780040211> and Gart & Nam (1988) | ||
<doi:10.2307/2531848>. The same score produces hypothesis tests | ||
analogous to the test for binomial RD and RR by Farrington & Manning | ||
(1990) <doi:10.1002/sim.4780091208>, or the McNemar test for paired | ||
data. The package also includes MOVER methods (Method Of Variance | ||
Estimates Recovery) for all contrasts, derived from the Newcombe | ||
method but with options to use equal-tailed intervals in place of the | ||
Wilson score method, and generalised for Bayesian applications | ||
incorporating prior information. So-called 'exact' methods for | ||
strictly conservative coverage are approximated using continuity | ||
corrections, and the amount of correction can be selected to avoid | ||
over-conservative coverage. Also includes methods for stratified | ||
calculations (e.g. meta-analysis), either assuming fixed effects | ||
(matching the CMH test) or incorporating stratum heterogeneity. | ||
License: GPL (>= 3) | ||
URL: https://github.com/petelaud/ratesci | ||
BugReports: https://github.com/petelaud/ratesci/issues | ||
Depends: | ||
R (>= 3.6.0) | ||
Suggests: | ||
testthat | ||
Encoding: UTF-8 | ||
LazyData: true | ||
Roxygen: list(markdown = TRUE) | ||
RoxygenNote: 7.3.2 |