Updated ectyper --help message info with correct default values

phac-nml · Mar 1, 2024 · 7faddfb · 7faddfb
1 parent 0545926
commit 7faddfb
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/ectyper/commandLineOptions.py b/ectyper/commandLineOptions.py
@@ -72,31 +72,31 @@ def checkdbversion():
         "-opid",
         "--percentIdentityOtype",
         type=check_percentage,
-        help="Percent identity required for an O antigen allele match [default 90]",
+        help="Percent identity required for an O antigen allele match [default %(default)s]",
         default=90
     )
 
     parser.add_argument(
         "-hpid",
         "--percentIdentityHtype",
         type=check_percentage,
-        help="Percent identity required for an H antigen allele match [default 95]",
+        help="Percent identity required for an H antigen allele match [default %(default)s]",
         default=95
     )
 
     parser.add_argument(
         "-opcov",
         "--percentCoverageOtype",
         type=check_percentage,
-        help="Minumum percent coverage required for an O antigen allele match [default 95]",
+        help="Minumum percent coverage required for an O antigen allele match [default %(default)s]",
         default=90
     )
 
     parser.add_argument(
         "-hpcov",
         "--percentCoverageHtype",
         type=check_percentage,
-        help="Minumum percent coverage required for an H antigen allele match [default 50]",
+        help="Minumum percent coverage required for an H antigen allele match [default %(default)s]",
         default=50
     )