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Add --assigned-by=UniProt arg for UniProt data
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kimrutherford committed Sep 17, 2024
1 parent 2525e3c commit 19ee841
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@@ -233,6 +233,7 @@ $POMBASE_CHADO/script/pombase-import.pl $POMBASE_LEGACY/load-pombase-chado.yaml
echo "loading features created from UniProt data file"

$POMCUR/bin/pombase-create-annotations uniprot-data-tsv \
--assigned-by=UniProt \
--reference=PMID:36408920 --glycosylation-site-termid=MOD:00693 \
--disulphide-bond-termid=MOD:00689 \
--peptide-fasta=<(gzip -d < $POMCUR_LATEST_BUILD/fasta/feature_sequences/peptide.fa.gz) \

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