chore(deps): update pre-commit hooks (#5513)

* chore(deps): update pre-commit hooks

updates:
- [github.com/pre-commit/mirrors-clang-format: v19.1.6 → v19.1.7](pre-commit/mirrors-clang-format@v19.1.6...v19.1.7)
- [github.com/astral-sh/ruff-pre-commit: v0.8.6 → v0.9.4](astral-sh/ruff-pre-commit@v0.8.6...v0.9.4)
- [github.com/codespell-project/codespell: v2.3.0 → v2.4.1](codespell-project/codespell@v2.3.0...v2.4.1)
- [github.com/PyCQA/pylint: v3.3.3 → v3.3.4](pylint-dev/pylint@v3.3.3...v3.3.4)
- [github.com/python-jsonschema/check-jsonschema: 0.30.0 → 0.31.1](python-jsonschema/check-jsonschema@0.30.0...0.31.1)

* style: pre-commit fixes

* Rename `lins` to `lst` in test_pytypes.py to resolve codespell errors:

```
codespell................................................................Failed
- hook id: codespell
- exit code: 65

tests/test_pytypes.py:55: lins ==> lines, links, lions, loins, limns
tests/test_pytypes.py:56: lins ==> lines, links, lions, loins, limns
tests/test_pytypes.py:58: lins ==> lines, links, lions, loins, limns
tests/test_pytypes.py:70: lins ==> lines, links, lions, loins, limns
tests/test_pytypes.py:71: lins ==> lines, links, lions, loins, limns
tests/test_pytypes.py:72: lins ==> lines, links, lions, loins, limns
tests/test_pytypes.py:73: lins ==> lines, links, lions, loins, limns
tests/test_pytypes.py:74: lins ==> lines, links, lions, loins, limns
tests/test_pytypes.py:75: lins ==> lines, links, lions, loins, limns
tests/test_pytypes.py:76: lins ==> lines, links, lions, loins, limns
```

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <[email protected]>

.pre-commit-config.yaml

@@ -25,14 +25,14 @@ repos:
 
 # Clang format the codebase automatically
 - repo: https://github.com/pre-commit/mirrors-clang-format
-  rev: "v19.1.6"
+  rev: "v19.1.7"
   hooks:
   - id: clang-format
     types_or: [c++, c, cuda]
 
 # Ruff, the Python auto-correcting linter/formatter written in Rust
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.8.6
+  rev: v0.9.4
   hooks:
   - id: ruff
     args: ["--fix", "--show-fixes"]
@@ -119,7 +119,7 @@ repos:
 # Use tools/codespell_ignore_lines_from_errors.py
 # to rebuild .codespell-ignore-lines
 - repo: https://github.com/codespell-project/codespell
-  rev: "v2.3.0"
+  rev: "v2.4.1"
   hooks:
   - id: codespell
     exclude: ".supp$"
@@ -142,14 +142,14 @@ repos:
 
 # PyLint has native support - not always usable, but works for us
 - repo: https://github.com/PyCQA/pylint
-  rev: "v3.3.3"
+  rev: "v3.3.4"
   hooks:
   - id: pylint
     files: ^pybind11
 
 # Check schemas on some of our YAML files
 - repo: https://github.com/python-jsonschema/check-jsonschema
-  rev: 0.30.0
+  rev: 0.31.1
   hooks:
   - id: check-readthedocs
   - id: check-github-workflows

tests/conftest.py

@@ -212,9 +212,9 @@ def pytest_configure():
 
 def pytest_report_header(config):
     del config  # Unused.
-    assert (
-        pybind11_tests.compiler_info is not None
-    ), "Please update pybind11_tests.cpp if this assert fails."
+    assert pybind11_tests.compiler_info is not None, (
+        "Please update pybind11_tests.cpp if this assert fails."
+    )
     return (
         "C++ Info:"
         f" {pybind11_tests.compiler_info}"

tests/test_eigen_matrix.py

@@ -244,9 +244,9 @@ def test_eigen_ref_to_python():
     chols = [m.cholesky1, m.cholesky2, m.cholesky3, m.cholesky4]
     for i, chol in enumerate(chols, start=1):
         mymat = chol(np.array([[1.0, 2, 4], [2, 13, 23], [4, 23, 77]]))
-        assert np.all(
-            mymat == np.array([[1, 0, 0], [2, 3, 0], [4, 5, 6]])
-        ), f"cholesky{i}"
+        assert np.all(mymat == np.array([[1, 0, 0], [2, 3, 0], [4, 5, 6]])), (
+            f"cholesky{i}"
+        )
 
 
 def assign_both(a1, a2, r, c, v):

tests/test_pytypes.py

@@ -52,10 +52,10 @@ def test_from_iterable(pytype, from_iter_func):
 
 def test_iterable(doc):
     assert doc(m.get_iterable) == "get_iterable() -> Iterable"
-    lins = [1, 2, 3]
-    i = m.get_first_item_from_iterable(lins)
+    lst = [1, 2, 3]
+    i = m.get_first_item_from_iterable(lst)
     assert i == 1
-    i = m.get_second_item_from_iterable(lins)
+    i = m.get_second_item_from_iterable(lst)
     assert i == 2
 
 
@@ -67,13 +67,13 @@ def test_list(capture, doc):
     assert m.list_no_args() == []
     assert m.list_ssize_t() == []
     assert m.list_size_t() == []
-    lins = [1, 2]
-    m.list_insert_ssize_t(lins)
-    assert lins == [1, 83, 2]
-    m.list_insert_size_t(lins)
-    assert lins == [1, 83, 2, 57]
-    m.list_clear(lins)
-    assert lins == []
+    lst = [1, 2]
+    m.list_insert_ssize_t(lst)
+    assert lst == [1, 83, 2]
+    m.list_insert_size_t(lst)
+    assert lst == [1, 83, 2, 57]
+    m.list_clear(lst)
+    assert lst == []
 
     with capture:
         lst = m.get_list()

tests/test_smart_ptr.py

@@ -313,9 +313,8 @@ def test_smart_ptr_from_default():
     instance = m.HeldByDefaultHolder()
     with pytest.raises(RuntimeError) as excinfo:
         m.HeldByDefaultHolder.load_shared_ptr(instance)
-    assert (
-        "Unable to load a custom holder type from a "
-        "default-holder instance" in str(excinfo.value)
+    assert "Unable to load a custom holder type from a default-holder instance" in str(
+        excinfo.value
     )