Bump pandas from 2.1.2 to 2.1.3

[dependabot]

Bumps pandas from 2.1.2 to 2.1.3.

Release notes

Sourced from pandas's releases.

Pandas 2.1.3

This is a patch release in the 2.1.x series and includes some regression and bug fixes, and a security fix. We recommend that all users upgrade to this version.

See the full whatsnew for a list of all the changes.

The release will be available on the defaults and conda-forge channels:

conda install pandas

Or via PyPI:

python3 -m pip install --upgrade pandas

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Commits

• 2a953cf RLS: 2.1.3
• d9665ca Backport PR #55911 on branch 2.1.x (DOC: convert outdated example of NumPy's ...
• 92ce245 Backport PR #55907 on branch 2.1.x (DOC: Add release date for 2.1.3) (#55913)
• 1691a51 Backport PR #55894 on 2.1.x: Parquet/Feather IO: disable PyExtensionType auto...
• 4158666 Backport PR #55764 on branch 2.1.x (REGR: fix return class in _constructor_fr...
• de8af3c Backport PR #55427 on branch 2.1.x (DOC: Remove outdated docs about NumPy's b...
• 569f904 Backport PR #55227 on branch 2.1.x (BUG: Interchange object data buffer has t...
• c9854d9 TST: Make read_csv tests pyarrow 13 compatable on 2.1.x (#55855)
• 7702f41 Backport PR #55853: DEPS: Use ipython run_cell instead of run_code; remove py...
• 0bf70c7 Backport PR #55761 on branch 2.1.x (BUG: DatetimeIndex.diff raising TypeError...
• Additional commits viewable in compare view

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[jan-janssen]

ModuleNotFoundError                       Traceback (most recent call last)
Cell In[1], line 4
      2 get_ipython().run_line_magic('matplotlib', 'inline')
      3 import matplotlib.pylab as plt
----> 4 from pyiron_atomistics import Project
      5 import ase.units as units
      6 import pandas

File ~/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/__init__.py:4
      1 __version__ = "0.1"
      2 __all__ = []
----> 4 from pyiron_atomistics.project import Project
      5 from pyiron_atomistics.toolkit import AtomisticsTools
      6 from pyiron_atomistics.atomistics.structure.atoms import (
      7     ase_to_pyiron,
      8     pyiron_to_ase,
      9     Atoms,
     10 )

File ~/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/project.py:34
     32 import pyiron_atomistics.atomistics.structure.pyironase as ase
     33 from pyiron_atomistics.atomistics.structure.atoms import Atoms
---> 34 from pyiron_atomistics.atomistics.structure.factory import StructureFactory
     35 from pyiron_atomistics.atomistics.master.parallel import pipe
     38 __author__ = "Joerg Neugebauer, Jan Janssen"

File ~/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/atomistics/structure/factory.py:40
     38 from pyiron_atomistics.atomistics.structure.factories.aimsgb import AimsgbFactory
     39 from pyiron_atomistics.atomistics.structure.factories.compound import CompoundFactory
---> 40 from pyiron_atomistics.atomistics.structure.factories.materialsproject import (
     41     MaterialsProjectFactory,
     42 )
     43 from pyiron_atomistics.atomistics.structure.pyironase import (
     44     publication as publication_ase,
     45 )
     46 from pyiron_atomistics.atomistics.structure.atoms import (
     47     CrystalStructure,
     48     Atoms,
   (...)
     51     ovito_to_pyiron,
     52 )

File ~/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/atomistics/structure/factories/materialsproject.py:2
      1 from typing import Union, List
----> 2 from mp_api.client import MPRester
      3 from pyiron_atomistics.atomistics.structure.has_structure import HasStructure
      4 from pyiron_atomistics.atomistics.structure.structurestorage import StructureStorage

File /usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/mp_api/client/__init__.py:8
      5 from importlib.metadata import PackageNotFoundError, version
      7 from .core import MPRestError
----> 8 from .mprester import MPRester
     10 try:
     11     __version__ = version("mp_api")

File /usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/mp_api/client/mprester.py:13
     11 from emmet.core.mpid import MPID
     12 from emmet.core.settings import EmmetSettings
---> 13 from emmet.core.tasks import TaskDoc
     14 from emmet.core.vasp.calc_types import CalcType
     15 from packaging import version

File /usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/emmet/core/tasks.py:10
      7 from pathlib import Path
      8 from typing import Any, Dict, List, Optional, Tuple, Type, TypeVar, Union
---> 10 from custodian.vasp.jobs import VaspJob
     11 import numpy as np
     12 from monty.json import MontyDecoder

ModuleNotFoundError: No module named 'custodian'

[liamhuber]

macos latest 3.11

======================================================================
ERROR: test_convergence_goal (testing.test_serialMaster_non_modal.TestSerialMaster.test_convergence_goal)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/Users/runner/work/pyiron_atomistics/pyiron_atomistics/tests/testing/test_serialMaster_non_modal.py", line 90, in test_convergence_goal
    self.project.wait_for_job(job_ser, interval_in_s=5, max_iterations=50)
  File "/Users/runner/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/project/generic.py", line 1428, in wait_for_job
    wait_for_job(
  File "/Users/runner/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/jobs/job/extension/server/queuestatus.py", line 237, in wait_for_job
    raise ValueError(
ValueError: Maximum iterations reached, but the job was not finished.

----------------------------------------------------------------------

I don't actually intend to fix this right now, I only stuck my nose in here to demonstrate for #1207 that the custodian issue is resolved