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Bump phonopy from 2.15.1 to 2.17.0 #898

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Dec 15, 2022
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@dependabot dependabot bot commented on behalf of github Dec 12, 2022

Bumps phonopy from 2.15.1 to 2.17.0.

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Bumps [phonopy](https://phonopy.github.io/phonopy/) from 2.15.1 to 2.17.0.

---
updated-dependencies:
- dependency-name: phonopy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Dec 12, 2022
@jan-janssen
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Traceback (most recent call last):
[541](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:542)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/nbclient/client.py", line 776, in _async_poll_for_reply
[542](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:543)
    msg = await ensure_async(self.kc.shell_channel.get_msg(timeout=new_timeout))
[543](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:544)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/jupyter_core/utils/__init__.py", line 172, in ensure_async
[544](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:545)
    result = await obj
[545](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:546)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/jupyter_client/channels.py", line 224, in get_msg
[546](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:547)
    ready = await self.socket.poll(timeout)
[547](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:548)
asyncio.exceptions.CancelledError
[548](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:549)

[549](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:550)
During handling of the above exception, another exception occurred:
[550](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:551)

[551](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:552)
Traceback (most recent call last):
[552](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:553)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/nbclient/client.py", line 1002, in async_execute_cell
[553](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:554)
    exec_reply = await self.task_poll_for_reply
[554](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:555)
asyncio.exceptions.CancelledError
[555](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:556)

[556](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:557)
During handling of the above exception, another exception occurred:
[557](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:558)

[558](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:559)
Traceback (most recent call last):
[559](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:560)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/papermill/cli.py", line 250, in papermill
[560](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:561)
    execute_notebook(
[561](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:562)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/papermill/execute.py", line 107, in execute_notebook
[562](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:563)
    nb = papermill_engines.execute_notebook_with_engine(
[563](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:564)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/papermill/engines.py", line 49, in execute_notebook_with_engine
[564](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:565)
    return self.get_engine(engine_name).execute_notebook(nb, kernel_name, **kwargs)
[565](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:566)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/papermill/engines.py", line 359, in execute_notebook
[566](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:567)
    cls.execute_managed_notebook(nb_man, kernel_name, log_output=log_output, **kwargs)
[567](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:568)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/papermill/engines.py", line 418, in execute_managed_notebook
[568](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:569)
    return PapermillNotebookClient(nb_man, **final_kwargs).execute()
[569](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:570)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/papermill/clientwrap.py", line 45, in execute
[570](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:571)
    self.papermill_execute_cells()
[571](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:572)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/papermill/clientwrap.py", line 72, in papermill_execute_cells
[572](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:573)
    self.execute_cell(cell, index)
[573](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:574)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/jupyter_core/utils/__init__.py", line 160, in wrapped
[574](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:575)
    return loop.run_until_complete(inner)
[575](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:576)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/asyncio/base_events.py", line 649, in run_until_complete
[576](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:577)
    return future.result()
[577](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:578)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/nbclient/client.py", line 1006, in async_execute_cell
[578](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:579)
    raise DeadKernelError("Kernel died")
[579](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:580)
nbclient.exceptions.DeadKernelError: Kernel died
[580](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:581)
Input Notebook:  notebooks/pipeline.ipynb
[581](https://github.com/pyiron/pyiron_atomistics/actions/runs/3676274383/jobs/6216718762#step:9:582)
Output Notebook: notebooks/pipeline-out.ipynb

@jan-janssen jan-janssen merged commit 302839a into main Dec 15, 2022
@delete-merged-branch delete-merged-branch bot deleted the dependabot/pip/phonopy-2.17.0 branch December 15, 2022 03:45
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