Add ruff formatter #205
Add ruff formatter #205
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WalkthroughThe recent updates enhance the robustness and readability of the Changes
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Actionable comments posted: 5
Review Details
Configuration used: CodeRabbit UI
Review profile: CHILL
Files selected for processing (11)
- .ci_support/release.py (3 hunks)
- .pre-commit-config.yaml (1 hunks)
- docs/source/conf.py (1 hunks)
- pylammpsmpi/init.py (1 hunks)
- pylammpsmpi/mpi/lmpmpi.py (3 hunks)
- pylammpsmpi/wrapper/concurrent.py (2 hunks)
- setup.py (1 hunks)
- tests/test_ase_interface.py (8 hunks)
- tests/test_base.py (3 hunks)
- tests/test_concurrent.py (3 hunks)
- tests/test_pylammpsmpi_local.py (4 hunks)
Files skipped from review due to trivial changes (6)
- .pre-commit-config.yaml
- pylammpsmpi/mpi/lmpmpi.py
- pylammpsmpi/wrapper/concurrent.py
- setup.py
- tests/test_ase_interface.py
- tests/test_pylammpsmpi_local.py
Additional Context Used
Ruff (5)
.ci_support/release.py (4)
3-3: Ambiguous variable name:
l
25-25: Ambiguous variable name:
l
46-46: Ambiguous variable name:
l
49-49: Ambiguous variable name:
ldocs/source/conf.py (1)
32-32: Module level import not at top of file
Additional comments not posted (10)
pylammpsmpi/__init__.py (1)
11-15: The try-except block for importingLammpsASELibraryis correctly implemented to handle the optional dependency onase.docs/source/conf.py (1)
9-9: Standardizing string quotations to double quotes improves consistency.Also applies to: 16-16, 18-18, 25-25, 26-26
.ci_support/release.py (1)
55-69: The main block for handling dependencies and versions is appropriately updated to improve robustness.tests/test_concurrent.py (4)
17-17: Adding a comma at the end of thecmdargslist improves consistency.
97-99: Reformatting the assertion intest_versionimproves readability.
104-107: Adding a comma at the end of the list intest_extract_globalimproves consistency.
118-120: Reformatting the assertion intest_propertiesimproves readability.tests/test_base.py (3)
21-21: Comma added for better readability.
34-34: Comma added for better readability.
117-117: Comma added for better readability.
| @@ -4,10 +4,14 @@ | |||
| from pylammpsmpi.wrapper.concurrent import LammpsConcurrent | |||
| from pylammpsmpi.wrapper.base import LammpsBase | |||
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| __all__ = [LammpsLibrary, LammpsConcurrent, LammpsBase] | |||
There was a problem hiding this comment.
Ensure LammpsASELibrary is only added to __all__ when ase is installed.
- __all__ = [LammpsLibrary, LammpsConcurrent, LammpsBase]
+ __all__ = [LammpsLibrary, LammpsConcurrent, LammpsBase, "LammpsASELibrary"]The __all__ list should include "LammpsASELibrary" as a string to avoid potential issues when ase is not installed.
Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
| __all__ = [LammpsLibrary, LammpsConcurrent, LammpsBase] | |
| __all__ = [LammpsLibrary, LammpsConcurrent, LammpsBase, "LammpsASELibrary"] |
| main(["-e", "-o", "apidoc", "../../pylammpsmpi/", "--force"]) |
There was a problem hiding this comment.
Move the import statement for main to the top of the file to follow best practices for module-level imports.
- from sphinx.ext.apidoc import main
- main(["-e", "-o", "apidoc", "../../pylammpsmpi/", "--force"])
+ from sphinx.ext.apidoc import main
# -- Generate API documentation ----------------------------------------------
# https://www.sphinx-doc.org/en/master/man/sphinx-apidoc.html
main(["-e", "-o", "apidoc", "../../pylammpsmpi/", "--force"])Module-level imports should be at the top of the file.
Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
| main(["-e", "-o", "apidoc", "../../pylammpsmpi/", "--force"]) | |
| from sphinx.ext.apidoc import main | |
| # -- Generate API documentation ---------------------------------------------- | |
| # https://www.sphinx-doc.org/en/master/man/sphinx-apidoc.html | |
| main(["-e", "-o", "apidoc", "../../pylammpsmpi/", "--force"]) |
| @@ -1,12 +1,19 @@ | |||
| def get_setup_version_and_pattern(setup_content): | |||
| depend_lst, version_lst = [], [] | |||
| for l in setup_content: | |||
There was a problem hiding this comment.
Rename the variable l to a more descriptive name to improve code readability.
- for l in setup_content:
- if "==" in l:
- lst = (
- l.split("[")[-1]
- .split("]")[0]
- .replace(" ", "")
- .replace('"', "")
- .replace("'", "")
- .split(",")
- )
- for dep in lst:
- if dep != "\n":
- version_lst.append(dep.split("==")[1])
- depend_lst.append(dep.split("==")[0])
+ for line in setup_content:
+ if "==" in line:
+ lst = (
+ line.split("[")[-1]
+ .split("]")[0]
+ .replace(" ", "")
+ .replace('"', "")
+ .replace("'", "")
+ .split(",")
+ )
+ for dep in lst:
+ if dep != "\n":
+ version_lst.append(dep.split("==")[1])
+ depend_lst.append(dep.split("==")[0])The variable name l is ambiguous and should be renamed to line for better readability.
Also applies to: 26-26, 46-46, 49-49
Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
| for l in setup_content: | |
| for line in setup_content: |
| @@ -16,14 +23,14 @@ | |||
| read_flag = False | |||
| depend_lst, version_lst = [], [] | |||
| for l in env_content: | |||
| if 'dependencies:' in l: | |||
| if "dependencies:" in l: | |||
There was a problem hiding this comment.
Rename the variable l to a more descriptive name to improve code readability.
- for l in env_content:
- if "dependencies:" in l:
- read_flag = True
- elif read_flag:
- lst = l.replace("-", "").replace(" ", "").replace("\n", "").split("=")
- if len(lst) == 2:
- depend_lst.append(lst[0])
- version_lst.append(lst[1])
+ for line in env_content:
+ if "dependencies:" in line:
+ read_flag = True
+ elif read_flag:
+ lst = line.replace("-", "").replace(" ", "").replace("\n", "").split("=")
+ if len(lst) == 2:
+ depend_lst.append(lst[0])
+ version_lst.append(lst[1])The variable name l is ambiguous and should be renamed to line for better readability.
Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
| if "dependencies:" in l: | |
| if "dependencies:" in line: |
| @@ -35,27 +42,29 @@ | |||
| version_combo_dict[dep] = dep + "==" + ver | |||
|
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| setup_content_new = "" | |||
| pattern_dict = {d:d + "==" + v for d, v in version_high_dict.items()} | |||
| pattern_dict = {d: d + "==" + v for d, v in version_high_dict.items()} | |||
| for l in setup_content: | |||
There was a problem hiding this comment.
Rename the variable l to a more descriptive name to improve code readability.
- for l in setup_content:
- for k, v in pattern_dict.items():
- if v in l:
- l = l.replace(v, version_combo_dict[k])
- setup_content_new += l
+ for line in setup_content:
+ for k, v in pattern_dict.items():
+ if v in line:
+ line = line.replace(v, version_combo_dict[k])
+ setup_content_new += lineThe variable name l is ambiguous and should be renamed to line for better readability.
Also applies to: 49-49
Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
| for l in setup_content: | |
| for line in setup_content: | |
| for k, v in pattern_dict.items(): | |
| if v in line: | |
| line = line.replace(v, version_combo_dict[k]) | |
| setup_content_new += line |
Summary by CodeRabbit
New Features
Bug Fixes
Style
Tests