Checklist for 0.7 release

[fehiepsi]

TODO

• Bump versions in examples/tutorials
• Bump funsor version
• Update docker file
• Collect changelogs.
• Merge LDA example PR
• Support infer discrete in Predictive
• Some python blocks do not rendered well in README
• Review setup.py and docs/requirements files to make sure that the dependencies are stated correctly
• [ ] (optional) Add some examples to Predictive DOC Add Predictive examples #1084 Defer to a later release
• [ ] Get Add warning when initializing a substituted model #1058 merged (optional)
• [ ] (optional) add tutorial for truncated distribution Defer to a later release

[MarcoGorelli]

Add some examples to Predictive

Hi @fehiepsi - where should these be added? Happy to help if you like

[fehiepsi]

Thanks for offering, @MarcoGorelli! Could you help me add some snippets (not necessarily full example code) to Predictive docstring and mention Predictive in both SVI and MCMC docstring? Something like

# For MCMC
mcmc = MCMC(kernel, num_warmup=1000, num_samples=1000)
mcmc.run(rng_key0, *model_args, **model_kwargs)
posterior_samples = mcmc.get_samples()
predictive = Predictive(model, posterior_samples=posterior_samples)
samples = predictive(rng_key1, *model_args, **model_kwargs)

# For SVI
svi = SVI(model, guide, optim, elbo)
svi_result = svi.run(rng_key0, *model_args, **model_kwargs)
predictive = Predictive(model, guide=guide, params=svi_result.params, num_samples=1000)
samples = predictive(rng_key1, *model_args, **model_kwargs)

# For prior predictive
predictive = Predictive(model, num_samples=1000)
samples = predictive(rng_key1, *model_args, **model_kwargs)

[MarcoGorelli]

Sure, will do that (as this would've helped me last week 😄 ) - when does it need doing by? I should be able to get to this on Sunday

[fehiepsi]

Thanks, please take your time! I think we can release sometime next week. :)

…

On Fri, Jul 2, 2021, 10:29 AM Marco Edward Gorelli ***@***.***> wrote: Sure, will do that (as this would've helped me last week 😄 ) - when does it need doing by? I should be able to get to this on Sunday — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#1082 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABEEKVXLZQSZHOVD4VN7C7DTVXENJANCNFSM47V4JC7A> .

[OlaRonning]

Update docker file

What changes are required?

[fehiepsi]

@OlaRonning It is just removing version restriction. Are you using docker?

[OlaRonning]

@OlaRonning It is just removing version restriction. Are you using docker?

Rarely for NumPyro, but often for preprocessing software. You mean removing this and change RUN pip install to RUN pip3 install --user numpyro jax jaxlib? Nvm, you mean numpyro version restriction.

[fehiepsi]

there is no longer CUDA 112 version because the 111 built will work for the remaining versions in the 11x series.

[OlaRonning]

I see, thanks for claryfying!

[fehiepsi]

This indentation is an attempt to make python code rendered correctly here. This only happens on readthedocs, I can't reproduce in my system.

[fehiepsi]

This is to make the sidebar closer to Pyro docs. In addition, by removing the api level, more headers can be accessed through the sidebar.

[fehiepsi]

@martinjankowiak @fritzo @eb8680 Could you help me review and merge this PR? Here I just pump the version and make the sidebar closer to Pyro docs. (there are a few other minor changes but they are nits I think).

[martinjankowiak]

lgtm should i go ahead and merge?

[fehiepsi]

Thanks, Martin! I can merge it. :)