Replace ApplicationIndexBuildItem with CombinedIndexBuildItem and sea…

…rch for resources in all the application archives instead of only in the root where it makes sense

extensions/arc/deployment/src/main/java/io/quarkus/arc/deployment/ArcProcessor.java

@@ -78,7 +78,7 @@
  * <li>{@link ValidationPhaseBuildItem}</li>
  * </ol>
  * These build items are especially useful if an extension needs to produce other build items within the given phase.
- * 
+ *
  * @see BeanProcessor
  */
 public class ArcProcessor {

extensions/arc/deployment/src/main/java/io/quarkus/arc/deployment/configproperties/ConfigPropertiesBuildStep.java

@@ -18,7 +18,6 @@
 import io.quarkus.deployment.GeneratedClassGizmoAdaptor;
 import io.quarkus.deployment.annotations.BuildProducer;
 import io.quarkus.deployment.annotations.BuildStep;
-import io.quarkus.deployment.builditem.ApplicationIndexBuildItem;
 import io.quarkus.deployment.builditem.CombinedIndexBuildItem;
 import io.quarkus.deployment.builditem.DeploymentClassLoaderBuildItem;
 import io.quarkus.deployment.builditem.GeneratedClassBuildItem;
@@ -40,7 +39,6 @@ void produceConfigPropertiesMetadata(CombinedIndexBuildItem combinedIndex, ArcCo
 
     @BuildStep
     void setup(CombinedIndexBuildItem combinedIndex,
-            ApplicationIndexBuildItem applicationIndex,
             List<ConfigPropertiesMetadataBuildItem> configPropertiesMetadataList,
             BuildProducer<GeneratedClassBuildItem> generatedClasses,
             BuildProducer<GeneratedBeanBuildItem> generatedBeans,
@@ -89,7 +87,7 @@ void setup(CombinedIndexBuildItem combinedIndex,
                 boolean needsValidation = ClassConfigPropertiesUtil.addProducerMethodForClassConfigProperties(
                         deploymentClassLoader.getClassLoader(), classInfo, producerClassCreator,
                         configPropertiesMetadata.getPrefix(), configPropertiesMetadata.getNamingStrategy(),
-                        applicationIndex.getIndex(), configProperties);
+                        combinedIndex.getIndex(), configProperties);
                 if (needsValidation) {
                     configClassesThatNeedValidation.add(classInfo.name());
                 }

extensions/elytron-security-properties-file/deployment/pom.xml

@@ -28,10 +28,6 @@
             <groupId>io.quarkus</groupId>
             <artifactId>quarkus-vertx-http-deployment</artifactId>
         </dependency>
-        <dependency>
-            <groupId>io.quarkus</groupId>
-            <artifactId>quarkus-elytron-security</artifactId>
-        </dependency>
         <dependency>
             <groupId>io.quarkus</groupId>
             <artifactId>quarkus-elytron-security-deployment</artifactId>

extensions/infinispan-client/deployment/src/main/java/io/quarkus/infinispan/client/deployment/InfinispanClientProcessor.java

@@ -8,10 +8,10 @@
 import java.nio.file.Files;
 import java.nio.file.Path;
 import java.util.Arrays;
+import java.util.Collection;
 import java.util.Collections;
 import java.util.HashSet;
 import java.util.Iterator;
-import java.util.List;
 import java.util.Properties;
 import java.util.Set;
 import java.util.stream.Stream;
@@ -34,7 +34,7 @@
 import org.jboss.jandex.AnnotationTarget;
 import org.jboss.jandex.ClassInfo;
 import org.jboss.jandex.DotName;
-import org.jboss.jandex.Index;
+import org.jboss.jandex.IndexView;
 
 import io.quarkus.arc.deployment.AdditionalBeanBuildItem;
 import io.quarkus.arc.deployment.BeanContainerListenerBuildItem;
@@ -45,7 +45,7 @@
 import io.quarkus.deployment.annotations.ExecutionTime;
 import io.quarkus.deployment.annotations.Record;
 import io.quarkus.deployment.builditem.ApplicationArchivesBuildItem;
-import io.quarkus.deployment.builditem.ApplicationIndexBuildItem;
+import io.quarkus.deployment.builditem.CombinedIndexBuildItem;
 import io.quarkus.deployment.builditem.ExtensionSslNativeSupportBuildItem;
 import io.quarkus.deployment.builditem.FeatureBuildItem;
 import io.quarkus.deployment.builditem.HotDeploymentWatchedFileBuildItem;
@@ -78,7 +78,7 @@ InfinispanPropertiesBuildItem setup(ApplicationArchivesBuildItem applicationArch
             BuildProducer<AdditionalBeanBuildItem> additionalBeans,
             BuildProducer<ExtensionSslNativeSupportBuildItem> sslNativeSupport,
             BuildProducer<NativeImageConfigBuildItem> nativeImageConfig,
-            ApplicationIndexBuildItem applicationIndexBuildItem) throws ClassNotFoundException, IOException {
+            CombinedIndexBuildItem applicationIndexBuildItem) throws ClassNotFoundException, IOException {
 
         feature.produce(new FeatureBuildItem(FeatureBuildItem.INFINISPAN_CLIENT));
         additionalBeans.produce(AdditionalBeanBuildItem.unremovableOf(InfinispanClientProducer.class));
@@ -114,40 +114,42 @@ InfinispanPropertiesBuildItem setup(ApplicationArchivesBuildItem applicationArch
 
         InfinispanClientProducer.replaceProperties(properties);
 
-        Index index = applicationIndexBuildItem.getIndex();
+        IndexView index = applicationIndexBuildItem.getIndex();
 
         // This is always non null
         Object marshaller = properties.get(ConfigurationProperties.MARSHALLER);
 
         if (marshaller instanceof ProtoStreamMarshaller) {
-            ApplicationArchive applicationArchive = applicationArchivesBuildItem.getRootArchive();
-            // If we have properties file we may have to care about
-            Path metaPath = applicationArchive.getChildPath(META_INF);
-
-            if (metaPath != null) {
-                try (Stream<Path> dirElements = Files.list(metaPath)) {
-                    Iterator<Path> protoFiles = dirElements
-                            .filter(Files::isRegularFile)
-                            .filter(p -> p.toString().endsWith(PROTO_EXTENSION))
-                            .iterator();
-                    // We monitor the entire meta inf directory if properties are available
-                    if (protoFiles.hasNext()) {
-                        // Quarkus doesn't currently support hot deployment watching directories
-                        //                hotDeployment.produce(new HotDeploymentConfigFileBuildItem(META_INF));
-                    }
-
-                    while (protoFiles.hasNext()) {
-                        Path path = protoFiles.next();
-                        byte[] bytes = Files.readAllBytes(path);
-                        // This uses the default file encoding - should we enforce UTF-8?
-                        properties.put(InfinispanClientProducer.PROTOBUF_FILE_PREFIX + path.getFileName().toString(),
-                                new String(bytes, StandardCharsets.UTF_8));
+            for (ApplicationArchive applicationArchive : applicationArchivesBuildItem.getAllApplicationArchives()) {
+                // If we have properties file we may have to care about
+                Path metaPath = applicationArchive.getChildPath(META_INF);
+
+                if (metaPath != null) {
+                    try (Stream<Path> dirElements = Files.list(metaPath)) {
+                        Iterator<Path> protoFiles = dirElements
+                                .filter(Files::isRegularFile)
+                                .filter(p -> p.toString().endsWith(PROTO_EXTENSION))
+                                .iterator();
+                        // We monitor the entire meta inf directory if properties are available
+                        if (protoFiles.hasNext()) {
+                            // Quarkus doesn't currently support hot deployment watching directories
+                            //                hotDeployment.produce(new HotDeploymentConfigFileBuildItem(META_INF));
+                        }
+
+                        while (protoFiles.hasNext()) {
+                            Path path = protoFiles.next();
+                            System.out.println("  " + path.toAbsolutePath());
+                            byte[] bytes = Files.readAllBytes(path);
+                            // This uses the default file encoding - should we enforce UTF-8?
+                            properties.put(InfinispanClientProducer.PROTOBUF_FILE_PREFIX + path.getFileName().toString(),
+                                    new String(bytes, StandardCharsets.UTF_8));
+                        }
                     }
                 }
             }
 
             InfinispanClientProducer.handleProtoStreamRequirements(properties);
-            Set<ClassInfo> initializerClasses = index.getAllKnownImplementors(DotName.createSimple(
+            Collection<ClassInfo> initializerClasses = index.getAllKnownImplementors(DotName.createSimple(
                     SerializationContextInitializer.class.getName()));
             Set<SerializationContextInitializer> initializers = new HashSet<>(initializerClasses.size());
             for (ClassInfo ci : initializerClasses) {
@@ -168,7 +170,7 @@ InfinispanPropertiesBuildItem setup(ApplicationArchivesBuildItem applicationArch
         }
 
         // Add any user project listeners to allow reflection in native code
-        List<AnnotationInstance> listenerInstances = index.getAnnotations(
+        Collection<AnnotationInstance> listenerInstances = index.getAnnotations(
                 DotName.createSimple(ClientListener.class.getName()));
         for (AnnotationInstance instance : listenerInstances) {
             AnnotationTarget target = instance.target();

extensions/panache/hibernate-orm-panache/deployment/src/main/java/io/quarkus/hibernate/orm/panache/deployment/PanacheResourceProcessor.java

@@ -13,7 +13,6 @@
 import io.quarkus.arc.deployment.UnremovableBeanBuildItem;
 import io.quarkus.deployment.annotations.BuildProducer;
 import io.quarkus.deployment.annotations.BuildStep;
-import io.quarkus.deployment.builditem.ApplicationIndexBuildItem;
 import io.quarkus.deployment.builditem.BytecodeTransformerBuildItem;
 import io.quarkus.deployment.builditem.CombinedIndexBuildItem;
 import io.quarkus.deployment.builditem.FeatureBuildItem;
@@ -59,7 +58,6 @@ UnremovableBeanBuildItem ensureBeanLookupAvailable() {
 
     @BuildStep
     void build(CombinedIndexBuildItem index,
-            ApplicationIndexBuildItem applicationIndex,
             BuildProducer<BytecodeTransformerBuildItem> transformers,
             HibernateEnhancersRegisteredBuildItem hibernateMarker,
             BuildProducer<PanacheEntityClassesBuildItem> entityClasses) throws Exception {
@@ -109,7 +107,7 @@ void build(CombinedIndexBuildItem index,
         MetamodelInfo<EntityModel<EntityField>> modelInfo = modelEnhancer.getModelInfo();
         if (modelInfo.hasEntities()) {
             PanacheFieldAccessEnhancer panacheFieldAccessEnhancer = new PanacheFieldAccessEnhancer(modelInfo);
-            for (ClassInfo classInfo : applicationIndex.getIndex().getKnownClasses()) {
+            for (ClassInfo classInfo : index.getIndex().getKnownClasses()) {
                 String className = classInfo.name().toString();
                 if (!modelClasses.contains(className)) {
                     transformers.produce(new BytecodeTransformerBuildItem(className, panacheFieldAccessEnhancer));

extensions/spring-security/deployment/src/main/java/io/quarkus/spring/security/deployment/SpringSecurityProcessor.java

@@ -34,7 +34,7 @@
 import io.quarkus.deployment.GeneratedClassGizmoAdaptor;
 import io.quarkus.deployment.annotations.BuildProducer;
 import io.quarkus.deployment.annotations.BuildStep;
-import io.quarkus.deployment.builditem.ApplicationIndexBuildItem;
+import io.quarkus.deployment.builditem.CombinedIndexBuildItem;
 import io.quarkus.deployment.builditem.FeatureBuildItem;
 import io.quarkus.deployment.builditem.GeneratedClassBuildItem;
 import io.quarkus.gizmo.BytecodeCreator;
@@ -77,7 +77,7 @@ void registerSecurityInterceptors(BuildProducer<InterceptorBindingRegistrarBuild
     }
 
     @BuildStep
-    void addSpringSecuredSecurityCheck(ApplicationIndexBuildItem index,
+    void addSpringSecuredSecurityCheck(CombinedIndexBuildItem index,
             BuildProducer<AdditionalSecurityCheckBuildItem> additionalSecurityCheckBuildItems) {
 
         Set<MethodInfo> methodsWithSecurityAnnotation = new HashSet<>();
@@ -175,7 +175,7 @@ private boolean isPublicNonStaticNonConstructor(MethodInfo methodInfo) {
 
     @BuildStep
     void locatePreAuthorizedInstances(
-            ApplicationIndexBuildItem index,
+            CombinedIndexBuildItem index,
             BuildProducer<SpringPreAuthorizeAnnotatedMethodBuildItem> springPreAuthorizeAnnotatedMethods,
             BuildProducer<AnnotationsTransformerBuildItem> annotationsTransformer) {
         Map<MethodInfo, AnnotationInstance> result = new HashMap<>();
@@ -268,7 +268,7 @@ public void transform(TransformationContext transformationContext) {
      * The generation needs to be done in it's own build step otherwise we can end up with build cycle errors
      */
     @BuildStep
-    void generateNecessarySupportClasses(ApplicationIndexBuildItem index,
+    void generateNecessarySupportClasses(CombinedIndexBuildItem index,
             SpringPreAuthorizeAnnotatedMethodBuildItem springPreAuthorizeAnnotatedMethods,
             BuildProducer<GeneratedBeanBuildItem> generatedBeans,
             BuildProducer<UnremovableBeanBuildItem> unremovableBeans) {
@@ -343,7 +343,7 @@ void generateNecessarySupportClasses(ApplicationIndexBuildItem index,
     }
 
     @BuildStep
-    void addSpringPreAuthorizeSecurityCheck(ApplicationIndexBuildItem index,
+    void addSpringPreAuthorizeSecurityCheck(CombinedIndexBuildItem index,
             SpringPreAuthorizeAnnotatedMethodBuildItem springPreAuthorizeAnnotatedMethods,
             SpringBeanNameToDotNameBuildItem springBeanNames,
             BuildProducer<AdditionalSecurityCheckBuildItem> additionalSecurityChecks,