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Integrate (optional) progress bar - as a replacement for cat('.') #3

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Progress bar mode replaces parallel::mclapply with pbmcapply::pbmclapply and suppresses printing of consecutive dots when the user specifies progress_bar=T.

The pbmclapply package is already available on CRAN in a stable version and seems ok to be included as a dependency; for backward compatibility reasons the default value of progress_bar parameter is FALSE.

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