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Update README.md
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replikation authored Oct 29, 2020
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**poreCov | SARS-CoV-2 Workflow for nanopore sequencing data**
===

![](https://img.shields.io/badge/nextflow-20.01.0-brightgreen)
![](https://img.shields.io/badge/nextflow-20.07.0-brightgreen)
![](https://img.shields.io/badge/uses-docker-blue.svg)
![](https://img.shields.io/badge/uses-singularity-yellow.svg)
![](https://img.shields.io/badge/licence-GPL--3.0-lightgrey.svg)
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* Docker installation [here](https://docs.docker.com/v17.09/engine/installation/linux/docker-ce/ubuntu/#install-docker-ce)
* add docker to your User group via `sudo usermod -a -G docker $USER`
* Singularity installation [here](https://singularity.lbl.gov/install-linux)
* need
* if you cant use docker
* Conda installation [here](https://docs.conda.io/projects/conda/en/latest/user-guide/install/)
* not yet implemented
* not natively integrated, you can do conda install singularity nextflow in a new environment and execute poreCov via `-profile local,singularity`
* Nextflow via: `curl -s https://get.nextflow.io | bash`
* a java runtime is needed
* move `nextflow` executable to a path location
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