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Fix134 #135

Merged
merged 4 commits into from
Jun 30, 2021
Merged

Fix134 #135

merged 4 commits into from
Jun 30, 2021

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replikation
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@replikation replikation added bug Something isn't working prio: high labels Jun 29, 2021
@replikation replikation self-assigned this Jun 29, 2021
@replikation replikation mentioned this pull request Jun 29, 2021
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@replikation replikation linked an issue Jun 29, 2021 that may be closed by this pull request
nanopolish wf expecting medaka output #134
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@replikation replikation requested a review from hoelzer June 30, 2021 08:21
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hoelzer commented Jun 30, 2021

test is running...

nextflow run replikation/poreCov -r fix134 --nanopolish --fast5 fast5_pass --cachedir /scratch/singularity/poreCov --update -w work --cores 40 --max_cores 120 --krakendb /mnt/scratch_slow04/sc2/common/databases/kraken2/GRCh38.p13_SC2_2021-02-08.tar.gz -profile local,singularity --output results_nanopolish_test

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hoelzer approved these changes Jun 30, 2021
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@replikation worked and coverage plots were produced! can be merged and released form my side

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  • yep test run was also fine thx

@replikation replikation merged commit 3f9d011 into master Jun 30, 2021
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nanopolish wf expecting medaka output
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