reproanalysis-freesurfer

Reproanalysis Extension for integrating FreeSurfer

Requirements

• FreeSurfer
• niworkfows - for conversion to CIfTI; for installation instruction see niwfClass

Supported use-cases

• FreeSurfer reconstruction with workflow directives all, autorecon1, autorecon2, autorecon2-cp, autorecon2-wm, autorecon2-pial, autorecon3
• Volume-to-surface conversion and saving output into NIfTI, GIfTI, and/or CIfTI