document: PDF metadata extraction

* NEW API for metadata and full-text extraction for a PDF document.

Signed-off-by: Sébastien Délèze <[email protected]>

.travis.yml

@@ -55,7 +55,7 @@ python:
 
 before_install:
   - sudo apt-get update
-  - sudo apt-get install -y libxml2 libxml2-dev libxmlsec1 libxmlsec1-dev
+  - sudo apt-get install -y libxml2 libxml2-dev libxmlsec1 libxmlsec1-dev xpdf
   # Stop default travis services
   - "sudo service mysql stop"
   - "sudo service postgresql stop"

Dockerfile.base

@@ -24,7 +24,7 @@
 
 FROM inveniosoftware/centos7-python:3.6
 
-RUN yum -y install libxml2-devel xmlsec1-devel xmlsec1-openssl-devel libtool-ltdl-devel
+RUN yum -y install libxml2-devel xmlsec1-devel xmlsec1-openssl-devel libtool-ltdl-devel xpdf
 
 COPY Pipfile Pipfile.lock ./
 RUN pipenv install --deploy --system

MANIFEST.in

@@ -50,10 +50,14 @@ recursive-include docs *.txt
 recursive-include docs Makefile
 recursive-include sonar *.gitkeep
 recursive-include sonar *.po *.pot *.mo
-recursive-include sonar *.json *.html *.js *.scss
+recursive-include sonar *.json *.html *.js *.scss *.css
 recursive-include sonar *.png *.jpg *.svg
 recursive-include docker *.cfg *.conf *.crt *.ini *.key *.pem *.sh
 recursive-include tests *.py
+recursive-include tests *.doc
+recursive-include tests *.json
+recursive-include tests *.pdf
+recursive-include tests *.xml
 
 # added by check_manifest.py
 include *.html

Pipfile

@@ -16,6 +16,7 @@ lxml = ">=3.5.0,<4.2.6"
 orcid = "*"
 python-slugify = "*"
 python3-saml = "*"
+xmltodict = "*"
 
 [dev-packages]
 Flask-Debugtoolbar = ">=0.10.1"
@@ -33,6 +34,7 @@ pytest-mock = ">=1.6.0"
 pytest-pep8 = ">=1.0.6"
 pytest-random-order = ">=0.5.4"
 pytest-runner = ">=3.0.0,<5"
+docutils = "==0.15"
 
 [requires]
 python_version = "3.6"

docker-compose.full.yml

@@ -141,5 +141,9 @@ services:
     extends:
       file: docker-services.yml
       service: es
+  grobid:
+    extends:
+      file: docker-services.yml
+      service: grobid
 volumes:
   static_data:

docker-compose.yml

@@ -46,3 +46,7 @@ services:
     extends:
       file: docker-services.yml
       service: es
+  grobid:
+    extends:
+      file: docker-services.yml
+      service: grobid

docker-services.yml

@@ -98,3 +98,8 @@ services:
     command: --broker=amqp://guest:guest@mq:5672/ --broker_api=http://guest:guest@mq:15672/api/
     ports:
       - "5555:5555"
+  grobid:
+    image: lfoppiano/grobid:0.5.5
+    ports:
+      - "8070:8070"
+      - "8071:8071"

docker/nginx/Dockerfile

@@ -21,7 +21,8 @@ RUN apt-get update && apt-get upgrade -y && apt-get install -y \
         libxml2 \
         libxml2-dev \
         libxmlsec1 \
-        libxmlsec1-dev
+        libxmlsec1-dev \
+        xpdf
 
 COPY nginx.conf /etc/nginx/nginx.conf
 COPY conf.d/* /etc/nginx/conf.d/

setup.py

@@ -61,6 +61,11 @@
             'documents = sonar.modules.documents.views:blueprint',
             'shibboleth_authenticator = \
                 sonar.modules.shibboleth_authenticator.views.client:blueprint',
+            'pdf_extractor = \
+                sonar.modules.pdf_extractor.views.client:blueprint'
+        ],
+        'invenio_base.api_blueprints': [
+            'pdf_extractor = sonar.modules.pdf_extractor.views.api:blueprint'
         ],
         'invenio_assets.webpack': [
             'sonar_theme = sonar.theme.webpack:theme',
@@ -71,6 +76,7 @@
             'sonar_documents = sonar.modules.documents.config',
             'shibboleth_authenticator = \
                 sonar.modules.shibboleth_authenticator.config',
+            'pdf_extractor = sonar.modules.pdf_extractor.config',
         ],
         'invenio_i18n.translations': [
             'messages = sonar',