Bump cookiecutter template to 25c36c (#65)

# Changes

- bumped cookiecutter template to
robert-koch-institut/mex-template@25c36c

---------

Co-authored-by: Nicolas Drebenstedt <[email protected]>

.cruft.json

@@ -1,6 +1,6 @@
 {
   "template": "https://github.com/robert-koch-institut/mex-template",
-  "commit": "15dd517e9d8aebb087e1f0387cf726a8164e7913",
+  "commit": "25c36c49159f9309b55815b6606a8dfb66228858",
   "checkout": null,
   "context": {
     "cookiecutter": {

.dockerignore

@@ -113,7 +113,11 @@ dmypy.json
 *.db
 
 # Default exports
+*.ndjson
 data/
+identity.csv
+schema.json
+work/
 
 # Docker specifics
 **/.dockerignore

.github/workflows/docker.yml

@@ -11,4 +11,4 @@ jobs:
     timeout-minutes: 10
     steps:
       - name: Build, tag and push docker image to ghcr
-        uses: GlueOps/github-actions-build-push-containers@v0.3
+        uses: GlueOps/github-actions-build-push-containers@v0.4

.github/workflows/testing.yml

@@ -21,7 +21,7 @@ jobs:
 
     services:
       neo4j:
-        image: neo4j:5.9-community
+        image: neo4j:5.19-community
         env:
           NEO4J_AUTH: neo4j/password
         ports:

.gitignore

@@ -119,3 +119,7 @@ dmypy.json
 
 # Default exports
 *.ndjson
+data/
+identity.csv
+schema.json
+work/

compose.yaml

@@ -17,7 +17,7 @@ services:
       timeout: 5s
       retries: 5
   neo4j:
-    image: neo4j:5.9-community
+    image: neo4j:5.19-community
     environment:
       - NEO4J_AUTH=neo4j/password
     expose:

pyproject.toml

@@ -8,23 +8,23 @@ license = { file = "LICENSE" }
 urls = { Repository = "https://github.com/robert-koch-institut/mex-backend" }
 requires-python = "<3.13,>=3.11"
 dependencies = [
-    "fastapi>=0.110.1",
-    "httpx>=0.27.0",
+    "fastapi==0.111.0",
+    "httpx==0.27.0",
     "mex-common@git+https://github.com/robert-koch-institut/[email protected]",
-    "neo4j>=5.18.0",
-    "pydantic>=2.6.4",
-    "uvicorn[standard]>=0.29.0",
+    "neo4j==5.20.0",
+    "pydantic==2.7.1",
+    "uvicorn[standard]==0.29.0",
 ]
 optional-dependencies.dev = [
-    "black>=24.3.0",
-    "ipdb>=0.13.13",
-    "mypy>=1.9.0",
-    "pytest-cov>=4.1.0",
-    "pytest-random-order>=1.1.1",
-    "pytest>=8.1.1",
-    "ruff>=0.3.3",
-    "sphinx>=7.2.6",
-    "types-pytz>=2024.1.0",
+    "black==24.4.2",
+    "ipdb==0.13.13",
+    "mypy==1.10.0",
+    "pytest-cov==5.0.0",
+    "pytest-random-order==1.1.1",
+    "pytest==8.2.0",
+    "ruff==0.4.4",
+    "sphinx==7.3.7",
+    "types-pytz==2024.1.0.20240417",
 ]
 
 [project.scripts]
@@ -61,7 +61,6 @@ unit = { cmd = "pdm run pytest -m 'not integration'" }
 test = { cmd = "pdm run pytest" }
 all = { composite = ["install-all", "lint", "test", "doc"] }
 
-
 [tool.pydantic-mypy]
 warn_untyped_fields = true
 
@@ -137,5 +136,5 @@ known-first-party = ["mex", "tests"]
 convention = "google"
 
 [build-system]
-requires = ["pdm-backend==2.1.8"]
+requires = ["pdm-backend==2.3.0"]
 build-backend = "pdm.backend"

requirements.txt

@@ -1,4 +1,4 @@
 cruft==2.15.0
 pdm==2.15.2
-pre-commit==3.7.0
+pre-commit==3.7.1
 wheel==0.43.0

tests/ingest/test_main.py

@@ -6,7 +6,6 @@
 
 from mex.backend.graph.connector import GraphConnector
 from mex.common.models import AnyExtractedModel
-from mex.common.testing import Joker
 from tests.conftest import MockedGraph
 
 Payload = dict[str, list[dict[str, Any]]]
@@ -67,7 +66,6 @@ def test_bulk_insert_malformed(
                 "loc": ["body", "ExtractedContactPoint", 0, 1],
                 "msg": "Input should be a valid dictionary",
                 "input": "FAIL!",
-                "url": Joker(),
             }
         ]
     }