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Autocycler dotplot
Ryan Wick edited this page Sep 4, 2024
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Usage: autocycler dotplot [OPTIONS] --in_gfa <IN_GFA> --out_png <OUT_PNG>
Options:
-i, --in_gfa <IN_GFA> Autocycler GFA file (required)
-o, --out_png <OUT_PNG> File path where dot plot PNG will be saved (required)
--res <RES> Size (in pixels) of dot plot image [default: 2000]
--kmer <KMER> K-mer size to use in dot plot [default: 32]
-h, --help Print help
-V, --version Print version
- Step 1: Autocycler subsample
- Step 2: Generating input assemblies
- Step 3: Autocycler compress
- Step 4: Autocycler cluster
- Step 5: Autocycler trim
- Step 6: Autocycler resolve
- Step 7: Autocycler combine