-
Notifications
You must be signed in to change notification settings - Fork 5
Demo dataset
Ryan Wick edited this page Oct 21, 2024
·
17 revisions
This demo dataset is a small 'genome' consisting of some E. coli plasmids. By excluding the chromosome, the file sizes are kept smaller, making this demo quicker to download and assemble.
The autocycler_demo_dataset.tar.gz file contains the following:
-
reads.fastq.gz: 75 Mbp of ONT reads -
truth.fasta: an error-free reference
- Step 1: Autocycler subsample
- Step 2: Generating input assemblies
- Step 3: Autocycler compress
- Step 4: Autocycler cluster
- Step 5: Autocycler trim
- Step 6: Autocycler resolve
- Step 7: Autocycler combine