[MAJOR, WIP] Using Pipenv, stable javabridge, node-sass, yarn and more (

HelikarLab#13)

* [MAJOR] Using Pipenv, stable javabridge, node-sass, yarn and more

* Remove python development versions from .travis.yml

* Remove unwanted ignores from .gitignore

* [FIX] Direct git.io to develop branch

* [FIX] Add sudo priviledges for Travis CI

* [FIX] Fixed R installation for get-candis

* [FIX] Use Travis CI container

* [FIX] Auto Agree Oracle JDK License

* [FIX] Add popen args and R testing

* [FIX] Fix R installation with upgrading package list

* [FIX] Fix R installation with installing dependencies

* [FIX] Fix R installation with installing dependencies

* [FIX] Install graphviz-dev package

.gitignore

@@ -1,17 +1,8 @@
-# env
-.env
-
-# virtualenv
-.venv
-venv
-
 # docs
 docs/build
 
 # Dependencies
 node_modules
-bower_components
-Gemfile.lock
 
 # Logs
 npm-debug.log

.travis.yml

@@ -6,9 +6,9 @@ python:
   - "3.3"
   - "3.4"
   - "3.5"
-  - "3.5-dev"
+  # - "3.5-dev"
   - "3.6"
-  - "3.6-dev"
-  - "3.7-dev"
+  # - "3.6-dev"
+  # - "3.7-dev"
 install:
-  - curl -sL bit.do/get-candis | python
+  - curl -sL git.io/install-candis | sudo python

Makefile

@@ -5,13 +5,14 @@ include .env
 
 BASEDIR      = $(realpath .)
 MODULE       = candis
+
 SOURCEDIR    = $(realpath $(MODULE))
 DOCSDIR      = $(realpath docs)
 
-VIRTUALENV   = virtualenv
+PIPENV      ?= pipenv
+PYBINARIES   = $(shell pipenv --venv)/bin
+PYTHON      ?= $(PYBINARIES)/python
 
-VENV         = venv
-PYBINARIES   = $(VENV)/bin
 
 PYTHON       = $(PYBINARIES)/python
 PIP          = $(PYBINARIES)/pip
@@ -24,12 +25,6 @@ NODE_MODULES = $(BASEDIR)/node_modules
 NODEBINARIES = $(NODE_MODULES)/.bin
 
 YARN        ?= yarn
-BUNDLER     ?= bundler
-
-venv:
-	pip3 install $(VIRTUALENV)
-
-	$(VIRTUALENV) $(VENV) --python python3
 
 clean.py:
 	$(PYTHON) setup.py clean
@@ -48,15 +43,8 @@ clean.force:
 	make clean
 
 install:
-	cat $(BASEDIR)/requirements/*.txt          > $(BASEDIR)/requirements-dev.txt
-	cat $(BASEDIR)/requirements/production.txt > $(BASEDIR)/requirements.txt
-
-	$(PIP) install numpy
-	$(PIP) install -r $(BASEDIR)/requirements-dev.txt
-
-	$(YARN) install
-
-	$(BUNDLER) install
+	$(PIPENV)  install
+	$(YARN)    install
 
 	$(PYTHON) setup.py develop
 

Pipfile

@@ -0,0 +1,45 @@
+[[source]]
+
+url = "https://pypi.python.org/simple"
+verify_ssl = true
+name = "pypi"
+
+
+[packages]
+
+addict = "*"
+pyyaml = "*"
+ipython = "*"
+requests = "*"
+numpy = "*"
+scipy = "*"
+matplotlib = "*"
+pandas = "*"
+seaborn = "*"
+"rpy2" = "*"
+liac-arff = "*"
+cython = "*"
+javabridge = "*"
+"python-weka-wrapper3" = "*"
+pygraphviz = "*"
+pillow = "*"
+flask = "*"
+django-htmlmin = "*"
+flask-socketio = "*"
+redis = "*"
+rq = "*"
+gunicorn = "*"
+
+
+[dev-packages]
+
+jupyter = "*"
+honcho = "*"
+pytest = "*"
+coverage = "*"
+pylint = "*"
+
+
+[requires]
+
+python_version = "3.6"