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UMI Support for hts_SuperDeduper!#261

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bnjenner merged 20 commits intos4hts:masters4hts/HTStream:masterfrom bnjenner:masterbnjenner/HTStream:masterCopy head branch name to clipboardApr 28, 2024

+104-13

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Commits on Apr 13, 2024

• hts_SuperDeduper umi support init

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  290aa54

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• hts_SuperDeduper UMI Dedup implemented

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• umi parameter rename and update test JSON files for SuperDeduper

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• hts_ExtractUMI del paramter

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• Revert "umi parameter rename and update test JSON files for SuperDeduper"

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Commits on Apr 14, 2024

• merge with master branch for hts_ExtractUMI additional params

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  committed
  89d64c8

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Commits on Apr 15, 2024

• Working implementation of UMI mode in hts_SuperDeduper

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  committed
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• hts_SuperDeduper help typo fix

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Commits on Apr 16, 2024

• bitjoin() fix, watches for key to return boost::none

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Commits on Apr 19, 2024

• update hts_ExtractUMI

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• hts_ExtractUMI hotfix

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Commits on Apr 25, 2024

• umi-support for hts_SuperDeduper

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  committed
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• hts_ExtractUMI typo

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  committed
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• Merge branch 's4hts:master' into master

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• hts_ExtractUMI merge conflict resolve

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  f52f4d3

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• Merge branch 'master' of github.com:bnjenner/HTStream

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  committed
  76e350e

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• More explicit extraction of UMI for DRAGEN format, hts_SuperDeduper

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  committed
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Commits on Apr 27, 2024

• Error message update, switch to const get_reads()

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• get_umi(), result.size() < 8

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Commits on Apr 28, 2024

• remove SuperDeduper logic from bit_join()

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