More UMI Stuff (hts_ExtractUMI and hts_SuperDeduper) #264
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…. SuperDeduper now supports umis in tag and had a column parameter
joe-angell
approved these changes
Oct 24, 2024
| for (const auto &c : get_comment()) { | ||
| idx = c.find("RX:Z:"); | ||
| if (idx != std::string::npos) { | ||
| std::string umi = c.substr(idx + 5); |
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Will the "RX:Z:" portion always be at the end of the comment string?
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It seems to be the standard for the UMI information.
| if (dragen & (del != ':')) { | ||
| throw HtsIOException("Delimiter (--delimiter) must be ':' to be compatible with --DRAGEN parameter"); | ||
| if (dragen & (del != ':' || sep != '+')) { | ||
| throw HtsIOException("Delimiter (--delimiter) must be ':' and Separator (--separator) was be '+' to be compatible with --DRAGEN parameter"); |
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Separator (--separator) was be '+' -> must be
|
Matt and I were talking about making this a release, any thoughts on that or things to change / bugs to fix before we make that happen? |
|
I pinged david on the bug fix he was working on, that's the only thing i
can think of atm.
…On Thu, Oct 24, 2024 at 11:19 AM Bradley N. Jenner ***@***.***> wrote:
Matt and I were talking about making this a release, any thoughts on that
or things to change / bugs to fix before we make that happen?
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So this PR has a number of changes.
This one is definitely gonna need some review so let me know if any of you would like to schedule a zoom chat to discuss the changes.