Update Dockerfile

saezlab · Mar 18, 2024 · f394200 · f394200
1 parent 3714571
commit f394200
Showing 1 changed file with 11 additions and 2 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -1,5 +1,14 @@
-FROM quay.io/biocontainers/decoupler:1.5.0--pyhdfd78af_0
+# Use a standard Python image as the base
+FROM python:3.12.2-slim
 
-# Install Python packages directly, skipping the apt/git installation
+# Install git
+RUN apt-get update && \
+    apt-get install -y git && \
+    rm -rf /var/lib/apt/lists/*
+
+# Now, git is available, so we can install packages directly from Git repositories
 RUN pip install omnipath==1.0.7 pandas==2.0.3
 RUN pip install --upgrade git+https://github.com/saezlab/decoupler-py
+
+# Assuming decoupler and other packages are now installed, continue with your setup...
+