[DRAFT] Add disclaimer about mapping representation

samtools · May 14, 2019 · 690e758 · 690e758
1 parent d962e2f
commit 690e758
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/SAMv1.tex b/SAMv1.tex
@@ -657,6 +657,7 @@ \section{Recommended Practice for the SAM Format}
     should be present.
   \item The {\tt NM} tag should be present.
   \end{enumerate}
+\item At present, this specification does not describe how mappings across the ``join'' in a circular reference sequence should be represented.
 \item Annotation dummy reads:
   These have {\sf SEQ} set to {\tt *}, {\sf FLAG} bits 0x100 and 0x200
   set (secondary and filtered), and a {\tt CT} tag.