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Release notes for v1.3.6
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yoda-vid committed Sep 18, 2020
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# MagellanMapper v1.3 Release Notes

## MagellanMapper v1.3.6

This release focuses on usability fixes. New settings settings and build tools have been added to support older Linux platforms.

### Changes

Installation
- `Dockerfile` based on Ubuntu 16.04 added to support running on older platforms

GUI
- Status bar shows pixel values in zoomed ROI plots
- Fixed upper/lower case in check box labels
- Fixed saving ROIs to use the original ROI offset
- Fixed resetting the labels opacity when scrolling through planes
- Fixed updating channels in the image adjustment panel for the current image type

CLI
- `--cpus <n>` command-line argument to specify the maximum number of CPUs to use for multiprocessing tasks
- ROI profile setting (`mp_max_tasks`) to set the maximum tasks per process, which can reduce memory usage considerably

Volumetric image processing
- Density heat maps default to using the whole image
- Fixed ROI saturation to use the `max_thresh_factor` ROI profile setting

I/O
- Better information when a file could not be found for import
- Specifying the `profiles` directory is no longer necessary when loading YAML profile files, including those in sub-directories
- Experiment names in the database now ignore any file extension

### Dependency Updates

#### Python Dependency Changes

- SimpleElastix compilation
- `Dockerfile` to build for older platforms
- Allow directory to be given as a relative path in the build script
- Fixed loading a library in the script
- Install Matplotlib >= 3.3.2 now that the performance regression starting in 3.3.0 has been fixed
- Additional Pandas dependencies can be installed by specifying the `pandas_plus` group (installed by default in the setup scripts)


## MagellanMapper v1.3.5

This release streamlines refreshing and overlaying images through the GUI. Workarounds are also provided for several installation/dependency issues.
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