Round up for customizing exports #445
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- Group matches using original blob coordinates for easier comparison - Show scaled coordinates and distances separately with corresponding indices - Add type hints
Exporting region IDs has output both a CSV and Excel files. Make the Excel file output optional to avoid an error when the export package is not available since this package is optional.
Add `--plot_labels rotation=<deg>` CLI argument to set the amount of rotation. Apply this rotation to swarm and bar plot tasks.
- Support RGB set on the CLI when exporting a stack of images - Refactor plane processing to use the rescale/resize wrapper - Add multichannel support to this wrapper
Files loaded directly as TIFs require the extension during loading, but the output file should not retain this extension.
Follow the same error formatting when Seaborn is missing in category plotting as for swarm plots.
…able Add an `Intercept` environment field to configure whether to include the intercept term in linear regressions.
- Transfer all columns from the stat coefficients output table rather than hard-coding column names - Clean up unused variable initializations and for-loop sequence
- Extract additional linear regression values - Store extra columns in results data frame to output stats table
- Add parameters to customize the legend title and pass arguments to the underlying Seaborn swarm plot, similar to the category plot wrapper - Use the data frame passed to `main` if given
Add a parameter to `main` to specify whether to save the plot.
Also, update CLI docs for `--plot_labels`.
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Various fixes and small enhancements for data export:
openpyxlpackage is now optional for region CSV file export--plot_labels rotation=<deg>sub-argument to specify label rotation for 2D plots, supported in swarm and bar plot x-labelsconfig.env$Intercept <- FALSEsettingr<sup>2</sup>and intercepts in linear regressions