Merge pull request #192 from aunderwo/master

Fix utf-8 encoding problems
sanger-pathogens · Aug 14, 2017 · 2a58a26 · 2a58a26
2 parents c0d7d8c + f59eb99
commit 2a58a26
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/ariba/ref_genes_getter.py b/ariba/ref_genes_getter.py
@@ -115,6 +115,7 @@ def _get_from_card(self, outprefix):
         for gene_key, gene_dict in sorted(json_data.items()):
             crecord = card_record.CardRecord(gene_dict)
             data = crecord.get_data()
+            data['ARO_description'] = data['ARO_description'].encode('utf-8')
             fasta_name_prefix = '.'.join([
                 card_record.CardRecord._ARO_name_to_fasta_name(data['ARO_name']),
                 data['ARO_accession'],