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docker installation
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andrewjpage committed Sep 29, 2016
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Expand Up @@ -45,6 +45,21 @@ If the tests all pass, install:

python3 setup.py install

### Docker
ARIBA can be run in a Docker container. First of all install Docker, then to install ARIBA run:

docker pull sangerpathogens/ariba

To use ARIBA you would use a command such as this (substituting in your directories), where your files are assumed to be stored in /home/ubuntu/data:

docker run --rm -it -v /home/ubuntu/data:/data sangerpathogens/ariba ariba -h


### Debian (testing)
ARIBA is available in the latest version of Debian, and over time will progressively filter through to Ubuntu and other distributions which use Debian. To install it as root:

sudo apt-get install ariba


### Dependencies and environment variables

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