rename before sanity checking

sanger-pathogens · Apr 27, 2016 · 970e7b6 · 970e7b6
1 parent 2acf3fc
commit 970e7b6
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/ariba/ref_preparer.py b/ariba/ref_preparer.py
@@ -137,8 +137,8 @@ def run(self, outdir):
             print('\nLoading and checking input data', flush=True)
 
         refdata_outprefix = os.path.join(outdir, 'refcheck')
-        self.refdata.sanity_check(refdata_outprefix)
         self.refdata.rename_sequences(refdata_outprefix + '.rename_info')
+        self.refdata.sanity_check(refdata_outprefix)
 
         if self.verbose:
             print('\nRunning cdhit', flush=True)