Code

Use subcommands#105

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martinghunt merged 6 commits intosanger-pathogens:mastersanger-pathogens/ariba:masterfrom martinghunt:use_subcommandsmartinghunt/ariba:use_subcommandsCopy head branch name to clipboardJul 20, 2016

+224-191

Commits

Commits on Jul 20, 2016

• Use subcommands

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  ae98dba

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• Suppress -h in main ariba; fix a few typos in help

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  3ecdb9f

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• remove unused import sys

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  625676a

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• Have 'avilable commands:' heading in the help

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  7d185a0

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• Options are already parsed

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  6fcd74c

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• report filter use outfile instead of outprefix. It only writes 1 file

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