Code

Contig renaming#130

Code

Merged

martinghunt merged 9 commits intosanger-pathogens:mastersanger-pathogens/ariba:masterfrom martinghunt:contig_renamingmartinghunt/ariba:contig_renamingCopy head branch name to clipboardAug 22, 2016

+104-16

Commits

Commits on Aug 22, 2016

• Replace more characters with underscore

  

  Martin Hunt

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  e2c1397

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• Store dict of sequence old to new name

  

  Martin Hunt

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  ac657b8

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• add rename_dict option

  

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  93103d6

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• add option rename_dict

  

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  4868fd6

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• add option rename_dict

  

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  70ccf75

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• Use rename_dict option

  

  Martin Hunt

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  ebaf70d

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• Handle removed sequences that are in user's cluster file

  

  Martin Hunt

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  ed66179

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• Also mention metadata log file

  

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  4d4335e

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• Version bump 2.2.2

  

  Martin Hunt

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  c6e8c03

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