Code

Ref seq choose use qry length#149

Code

Merged

martinghunt merged 6 commits intosanger-pathogens:mastersanger-pathogens/ariba:masterfrom martinghunt:ref_seq_choose_use_qry_lengthmartinghunt/ariba:ref_seq_choose_use_qry_lengthCopy head branch name to clipboardNov 18, 2016

+104-13

Commits

Commits on Nov 9, 2016

• Check qry hit length before ref hit length

  

  Martin Hunt

  committed
  9bad306

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• Set default cdhit -s option to 0.0

  

  Martin Hunt

  committed
  05f93b2

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Commits on Nov 15, 2016

• Set -f minimap option to 0.000001

  

  Martin Hunt

  committed
  1bdd559

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• Do not use -C with show-snps

  

  Martin Hunt

  committed
  b7ecdc1

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• require pymummer>=0.10.0

  

  Martin Hunt

  committed
  87c86fd

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Commits on Nov 18, 2016

• Require pymummer 0.10.1

  

  Martin Hunt

  committed
  9bac4fa

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