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Always run refcheck; Add JS candy output #37

Merged
merged 6 commits into from
Nov 25, 2015
Merged

Always run refcheck; Add JS candy output #37

merged 6 commits into from
Nov 25, 2015

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martinghunt
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Two changes:

  • Always run refcheck before running the pipeline, to stop a bad reference file of genes being used.
  • Option to the summary task to make JS candy output files: --js_candy outprefix

aslett1 added a commit that referenced this pull request Nov 25, 2015
@aslett1
Merge pull request #37 from martinghunt/always_run_refcheck
ac94d94 
Always run refcheck; Add JS candy output
@aslett1 aslett1 merged commit ac94d94 into sanger-pathogens:master Nov 25, 2015
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@martinghunt @aslett1