Code

Sample reads#46

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martinghunt merged 9 commits intosanger-pathogens:mastersanger-pathogens/ariba:masterfrom martinghunt:sample_readsmartinghunt/ariba:sample_readsCopy head branch name to clipboardApr 7, 2016

+288-37

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Commits on Apr 7, 2016

• Count total reads and bases in each cluster

  

  Martin Hunt

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  26a4688

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• Require number of reads and bases as input

  

  Martin Hunt

  committed
  4b8315b

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• Add method _number_of_reads_for_assembly()

  

  Martin Hunt

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  00cbeab

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• New method _make_reads_for_assembly()

  

  Martin Hunt

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  3d6ea71

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• Sample reads for assembling to save run time

  

  Martin Hunt

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  2a2a7b9

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• Sample reads before assembling

  

  Martin Hunt

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  ccab80b

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• Let user choose assembly coverage

  

  Martin Hunt

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  c2da40d

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• Use sampled reads for assembly

  

  Martin Hunt

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  1397cb3

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• Default assembly coverage 100

  

  Martin Hunt

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