Code

Card update use json#54

Code

Merged

martinghunt merged 15 commits intosanger-pathogens:mastersanger-pathogens/ariba:masterfrom martinghunt:card_update_use_jsonmartinghunt/ariba:card_update_use_jsonCopy head branch name to clipboardApr 18, 2016

+418-253

Commits

Commits on Apr 13, 2016

• Work in progress commit, going to work on another branch

  

  Martin Hunt

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  3032b6a

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Commits on Apr 15, 2016

• Better checking of reference genes

  

  Martin Hunt

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  b550834

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• Get more info about each sequence

  

  Martin Hunt

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  ff69c16

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• Initial working version that gets card json data

  

  Martin Hunt

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  e5920d3

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• Require pyfastaq >= 3.12.0

  

  Martin Hunt

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  e3c8164

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• Remove old card code

  

  Martin Hunt

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  9b25959

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• Remove unused imports

  

  Martin Hunt

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  8a07a4e

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• Remove unused variables

  

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  3b8370c

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• Remove unused imports

  

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  1e3a756

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• Fix variable name in error message

  

  Martin Hunt

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  bea04a5

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• Remove unused variables

  

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  465afd2

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• Check dna and protein sequence for consistency

  

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  6799c97

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Commits on Apr 18, 2016

• Uncomment code (was commented during debugging)

  

  Martin Hunt

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  05be6ff

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• Remove unneeded dependencies

  

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  2253cb9

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• import sys needed

  

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