Code

Specify cdhit clusters#80

Code

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martinghunt merged 9 commits intosanger-pathogens:mastersanger-pathogens/ariba:masterfrom martinghunt:specify_cdhit_clustersmartinghunt/ariba:specify_cdhit_clustersCopy head branch name to clipboardMay 10, 2016

+315-5

Commits

Commits on May 10, 2016

• New method _load_user_clusters_file

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  b44e3c2

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• Test bad input files

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  17c1ebc

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• New method run_get_clusters_from_file

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  4a9d746

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• Use rename_suffix option

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  ac12e30

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• add option clusters_file

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  a2e006b

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• Bux fix not adding suffix when skipping cdhit

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  2cb0c20

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• Bux fix not adding suffix when skipping cdhit

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  20eb581

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• Add --cdhit_clusters option

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• Do not allow both --no_cdhit and --cdhit_clusters

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