-
Notifications
You must be signed in to change notification settings - Fork 3
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
1 changed file
with
18 additions
and
16 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,34 +1,36 @@ | ||
| dist: bionic | ||
| language: python | ||
| before_install: | ||
| - sudo apt-get update | ||
| - sudo apt-get update | ||
| python: | ||
| - "3.8" | ||
| - '3.8' | ||
| install: | ||
| - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh | ||
| - bash miniconda.sh -b -p $HOME/miniconda | ||
| - source "$HOME/miniconda/etc/profile.d/conda.sh" | ||
| - hash -r | ||
| - conda config --set always_yes yes --set changeps1 no | ||
| - conda update -q conda | ||
| - conda info -a | ||
| - conda create -q -n test-environment -c conda-forge -c bioconda -y python=$TRAVIS_PYTHON_VERSION clang gxx_linux-64 make samtools=1.10 pytest | ||
| - conda activate test-environment | ||
| - ./install | ||
| - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh | ||
| - bash miniconda.sh -b -p $HOME/miniconda | ||
| - source "$HOME/miniconda/etc/profile.d/conda.sh" | ||
| - hash -r | ||
| - conda config --set always_yes yes --set changeps1 no | ||
| - conda update -q conda | ||
| - conda info -a | ||
| - conda create -q -n test-environment -c conda-forge -c bioconda -y python=$TRAVIS_PYTHON_VERSION | ||
| clang gxx_linux-64 make samtools=1.10 pytest | ||
| - conda activate test-environment | ||
| - "./install" | ||
| script: | ||
| - pytest -v | ||
| - pytest -v | ||
| before_deploy: | ||
| - echo "Auto release generated by Travis CI on "$(date +'%Y:%m:%d at %H:%M:%S') > release_notes | ||
| - echo "Auto release generated by Travis CI on "$(date +'%Y:%m:%d at %H:%M:%S') > | ||
| release_notes | ||
| - export release_name="PretextMap-"$(git describe --tags) | ||
| deploy: | ||
| edge: true | ||
| provider: releases | ||
| token: "$GITHUB_TOKEN" | ||
| file: release_notes | ||
| name: "$release_name" | ||
| body: "Auto-generated release by Travis CI" | ||
| body: Auto-generated release by Travis CI | ||
| prerelease: true | ||
| on: | ||
| tags: true | ||
| env: | ||
| secure: 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 | ||
| secure: 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 |