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Analysis of Deep Lesion CT dataset to identify potential improvements to CT scans for lesion identification

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satvikk/deepLesion_CT_analysis

 
 

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What is the optimal number of views to best identify lesions in CT Scans

Original Data Set Source: https://nihcc.app.box.com/v/DeepLesion

Setup Instructions:

  1. Download the full images data set from the source above
  2. Place all images into a folder called keyslices
  3. Install all requirements
  4. Run Preprocessing.ipynb to obtain folders with images split according to view count generated and split into train val and test along with labels
  5. Run the ModelTraining.ipynb to run the model and obtain the outputs.

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Analysis of Deep Lesion CT dataset to identify potential improvements to CT scans for lesion identification

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  • Jupyter Notebook 100.0%