add leiden

scverse · Apr 11, 2024 · 66a8fcb · 66a8fcb
1 parent 3d29def
commit 66a8fcb
Showing 1 changed file with 6 additions and 12 deletions.
diff --git a/benchmarks/benchmarks/tools.py b/benchmarks/benchmarks/tools.py
@@ -35,23 +35,17 @@ def peakmem_diffmap(self, *_):
     # def peakmem_embedding_density(self, *_):
     #     sc.tl.embedding_density(self.adata, groupby="batch")
 
-    # def time_louvain(self, *_):
-    #     sc.tl.louvain(self.adata)
+    def time_leiden(self, *_):
+        sc.tl.leiden(self.adata)
 
-    # def peakmem_louvain(self, *_):
-    #     sc.tl.louvain(self.adata)
+    def peakmem_leiden(self, *_):
+        sc.tl.leiden(self.adata)
 
     # def time_paga(self, *_):
-    #     sc.tl.paga(self.adata, groups='louvain')
+    #     sc.tl.paga(self.adata, groups='leiden')
 
     # def peakmem_paga(self, *_):
-    #     sc.tl.paga(self.adata, groups='louvain')
-
-    # def time_leiden(self, *_):
-    #     sc.tl.leiden(self.adata)
-
-    # def peakmem_leiden(self, *_):
-    #     sc.tl.leiden(self.adata)
+    #     sc.tl.paga(self.adata, groups='leiden')
 
     # def time_draw_graph(self, *_):
     #     sc.tl.draw_graph(self.adata)